Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1643 ATGCCTGGCAGTTTAGAACCGTTGGATTTGGGGGTTCAGATACCCTACCACTTCAGGTGCCCAATCTCGCTTGAGCTCATGAGAGATCCTGTGACGGTGTGCACCGGTCAAACATACGACCGAGGGAGCATCGAGTCATGGGTGAGCATAGGCAACACCACATGCCCAGTCACACGTGCCCCTCTCACCGACTTCACCCTAATCCCCAACCACACCTTACGCCGCCTCATCCAAGAGTGGTGCGTCGCCAACCGCGCTTTTGGCGTTGAGCGAATCCCCACTCCCAAACAGCCCGCAGACCCTGCCTTAGTTCGTTCTCTTCTCAACCAATCCTCTTCTGATTCTGCCCCCACTCACCTTCGCCTCTCCTCTCTCCGTCGACTCAGACAACTCGCTCGCGACTCCGATAAAAATCGCTCTCTCATTGCCTCTCACAACGTTCCTCAAATCCTCCTCCCAATCCTTTTTCGCAGCCACGCTTCCGACGAGTTGAACCACGAGTCACTCGCTTTACTCGTTCTCTTCCCACTCTCCGAGTCTGAGTGCGCCTCGCTCGCCTCCGACTCGGATAAGATTAACTACCTCTCCAGCTTGTTGTCTCATCCTTCACTTGACGTCCGAGTCAACTCGGCCGCTCTAATCGAGATCGTCGTCGCCGGGACTCACTCGCCGGATCTCCGAGCTCAGGTCAGCAATGTCGACGAAATTTACGAAGGCGTCGTCGACCTTCTCCGGAACCCGATCTCGATCCCTCGTGCGCTCAAGATCGGGATCAAGGCCTTGTTCGCGCTGTGTCTGGTGAAGCAGACGCGGCACAAGGCGGTGGAGGCCGGAGCGCCGGCGGTGCTTGTGGACCGGCTCGCGGATTTCGAGAAATGCGACGCGGAGAGAGCGCTGGCGACGGTGGAGCTTCTTTGTCGGATTCCCATGGGGTGCGCGACGTTCGCCGGCCACGCGCTGACGGTGCCAATGCTGGTGAAGATAATTCTGAAGATATCGGATCGCGCGACTGAGTACGCGGCCGGAGCGCTGCTGTCGCTGTGTTCGGAGTCGGAGCGGTGCCAGAGGGAGGCGGTGGCGGCGGGAGTGCTGACTCAGCTTCTGCTTCTGGTGCAGAGTGATTGCACGGAGAGAGCGAAGAGGAAGGCGCAGCTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTCCATCGGAAATTCTGACGATTTTGCATGCAGCCAGGTCGTTGTGGTGCCATTTTGA 1248 0.5809 MPGSLEPLDLGVQIPYHFRCPISLELMRDPVTVCTGQTYDRGSIESWVSIGNTTCPVTRAPLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQSSSDSAPTHLRLSSLRRLRQLARDSDKNRSLIASHNVPQILLPILFRSHASDELNHESLALLVLFPLSESECASLASDSDKINYLSSLLSHPSLDVRVNSAALIEIVVAGTHSPDLRAQVSNVDEIYEGVVDLLRNPISIPRALKIGIKALFALCLVKQTRHKAVEAGAPAVLVDRLADFEKCDAERALATVELLCRIPMGCATFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSIGNSDDFACSQVVVVPF* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1643 415 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Apr3g1643 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Apr3g1643 415 CDD RING-Ubox_PUB 18 59 IPR045210 -
Apr3g1643 415 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 411 - -
Apr3g1643 415 SUPERFAMILY RING/U-box 12 90 - -
Apr3g1643 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Apr3g1643 415 Gene3D - 93 403 IPR011989 -
Apr3g1643 415 SUPERFAMILY ARM repeat 103 390 IPR016024 -
Apr3g1643 415 PANTHER WDSAM1 PROTEIN 4 411 IPR045185 GO:0061630
Apr3g1643 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1643 Apr-Chr3 31936954 31938601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1643 1 415 U-box Gene Family AT3G19380 68.794 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1643 - - var:108341190 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1643 3 31936954 31938601 Apr3g1643 3 31936954 31938601 ECH