Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1642 ATGAACCTGACTACAGGAGATCAAGATTCTCATGACCTGACTTTCTTGTGGGAGAATCAGTCATGGGAACCCTCCAATTCTGATGAGTCAGGTGAAAGCAAAGAGAACATGACGCCACTGAACGAGTCAAAAGAAAGAAATGAAGGAGATCAAGCTGTGGTAAAAAAGAAGCGAAGCCGAAGAATTACTAGTGAAAATGAGAACATTGCAAGTGGTGAAGGGAAACATGGAAAGGGTCGTGAATCTGATCATGAAATGCATATATGGACTGAGAGAGAAAGGAGGAAGAAAATGAGGAACATGTTCGCTAGTCTTCATGCTTTGCTTCCGCAGCTTCCTTCCAAGGCGGATAAATCAACCATTGTGGATGAAGCAGTGAACTACATAAGAAGTCTACAGAAAAACCTCCAACAGCTAGAAAAACAGAAGCAAGAGAGGCTTCAACGTGTCTCCACTTTTGCTTGCGAGTCATCTATTGTCAACTCGCAATGGCAACCCTATGACTTAAGGGATGCAATAATCACTGATCAAGGCTCTTATAATAACTTTTCCAATGCAATTACAATGGGAACTTCATCAAGTGCACCTTCAACCTCTCAGCAACAGATAGCACCTTTCGATAGGTGGACTACTGCAAATGTTGCCTTGAACATTTGTGGAGGTGATGCACAATTCTCCATCTACGCCCCCAAGAAGCCAAACCTCTTGACCACCATCGCTTATGTGCTGGACAAGTACAATATTGAGGTCATGTCTGCAAATATTTTGAGCAATAGGAGTGAAAATTCATGCATGGTTCTAGCTCAAGCCAAACGAGCTCCATCTCAGTTCCCAGATGCAATTTCAGCGAAGGAAGCTTTCAAGCAAGCAGCAGGAGAGATTACGCTATTTATTTCTTAA 900 0.4267 MNLTTGDQDSHDLTFLWENQSWEPSNSDESGESKENMTPLNESKERNEGDQAVVKKKRSRRITSENENIASGEGKHGKGRESDHEMHIWTERERRKKMRNMFASLHALLPQLPSKADKSTIVDEAVNYIRSLQKNLQQLEKQKQERLQRVSTFACESSIVNSQWQPYDLRDAIITDQGSYNNFSNAITMGTSSSAPSTSQQQIAPFDRWTTANVALNICGGDAQFSIYAPKKPNLLTTIAYVLDKYNIEVMSANILSNRSENSCMVLAQAKRAPSQFPDAISAKEAFKQAAGEITLFIS* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1642 299 Gene3D - 79 154 IPR036638 GO:0046983
Apr3g1642 299 ProSiteProfiles ACT domain profile. 224 299 IPR002912 -
Apr3g1642 299 MobiDBLite consensus disorder prediction 1 84 - -
Apr3g1642 299 MobiDBLite consensus disorder prediction 1 37 - -
Apr3g1642 299 Coils Coil 122 149 - -
Apr3g1642 299 CDD bHLH_AtbHLH_like 87 140 IPR045239 -
Apr3g1642 299 SMART finulus 90 138 IPR011598 GO:0046983
Apr3g1642 299 Pfam Helix-loop-helix DNA-binding domain 87 133 IPR011598 GO:0046983
Apr3g1642 299 MobiDBLite consensus disorder prediction 38 64 - -
Apr3g1642 299 PANTHER - 13 296 IPR044278 GO:0003700|GO:0006355|GO:0009960
Apr3g1642 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 82 132 IPR011598 GO:0046983
Apr3g1642 299 PANTHER TRANSCRIPTION FACTOR BHLH95 13 296 - -
Apr3g1642 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 157 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1642 Apr-Chr3 31919562 31922580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1642 18 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.948 8.31e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr3g1642 HLH 7.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1642 - - gmx:102665879 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1642 3 31919562 31922580 Apr3g1642 3 31919562 31922580 ECH