Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1635 ATGGAGATCGCTCACGAGCCACCGGCTTCCCTCGACGGAAGCCCTATCCCCGCCGATACCCTTGCCAATTCTCCGTCTTCTTCTTCGTCTTCGTCTTCCTCCTCCTCCTCTTCCGCTTCGTCGCCTCGCGGTTCGAAGGGAAAAGAGATCGAAGGGACTGCGCCGACGACGGCGACGGCGGTGACGGCGGTGCCTGCTAGATACGACGACGACGATGAGGAGGAAGAGGACGTGTGCCGAATATGCCGGAACCCTGGCGACACCGAGAACCCTCTCCGGTATCCCTGCGCGTGTAGCGGGAGCATCAAGTTTGTGCATCAGGATTGTCTCCTTCAGTGGCTTAATCACAGCAACGCACGCCAATGCGAGGTCTGCAAGCATGCATTCTCCTTCTCTCCTGTTTATGCTGAGAATGCCCCAGCTAGGTTACCTTTTCAAGAGTTTGTGGTTGGAATGGCAATGAAAGCTTGCCATGTTCTTCAATTCTTTTTGCGTCTGAGTTTTGTGCTATCTGTGTGGCTTTTAATTATACCTTTCATAACATTTTGGATATGGCGATTAGCTTTTGTGAGGAGTTTAGGTGAAGCCCAGAGGTTATTCTTAAGCCATTTATCGACAGCAGTTATTCTTACTGATTGCCTCCATGGTTTCCTACTTTCTGCTAGCATTGTCTTCATTTTTCTTGGGGCCACTTCTTTGAGAGATTACTTTAGGCATTTGCGAGAAATTGGGGGACAGGATGCCGAAAGAGAAGATGAAGTAGACAGAAATGGTGCTCGAATTGCTAGAAGACCTCCTGGACAAGCTAATCGTAATATTAATGGTGATGGGAATGGGGAAGATGCTGGTGGAGCACAAGGAATTGCAGGTGCAGGTCAAGTAATTAGAAGAAATGCTGAAAATGTTGCTGCACGGTGGGAAATGCAAGCAGCACGTCTTGAGGCACATGTTGAGCAGATGTTTGATGGTTTGGATGATGCTGATGGAGCGGAGGATGTTCCCTTTGATGAACTTGTTGGCATGCAGGGTCCAGTGTTTCATTTGGTTGAGAATGCATTTACTGTGCTGGCAAGCAATATGATTTTCCTTGGTGTTGTAATCTTTGTGCCATTCTCATTGGGCCGCATCATACTCCATTATCTATCTTGGTTCTTCTCAACTGCTAGTGGTCCTGTGTTGTCAACTGTGGCCCCACTTGCAGACACATCTCTTTCTCTAGCAAACATTACTTTAAAGAATGCTTTAACAGCTGTTAAAAACTTGTCATCTGATACTCAAGGAAATGGATCAATTGAACAGGTTGCAGAAATGCTGAAAGTGAATGGTAGTGGATTGAGTGAAGTGTCAAACAACATAAGTGCGTCTGTTTCAGCTGATCTCTTGAGAGGAGGGTCAATTGGAACTTCAAGGCTTTCTGATGTTACAACTCTAGCTATTGGATATGTTTTTATATTGAGTCTGATTTTCTGCTACTTTGGAATTGTTGCTCTAATTCGTTACACAAAAGGTGAGCCTTTGACCATGGGAAGGTTCTATGGCATTGCTTCTATAGCAGAGACAATCCCATCTCTCTTCAGGCAGTTTTTGGCAGCAATGAGGCATTTGATGACGATGGTTAAGGTTGCTTTCCTTTTAGTCATTGAACTTGGGGTATTTCCTTTGATGTGTGGGTGGTGGCTTGATATTTGTACCATACAGATGTTTGGTAAGACAATGGTTCACAGAGTTCAGTTCTTCTCTGCATCCCCTTTAGCAAGCTCATTGGTTCATTGGGTTGTTGGAATTGTATACATGCTACAAATTAGCATATTTGTCAGCCTTCTTAGAGGGGTTTTACGCAATGGTGTTTTGTACTTCCTTCGGGACCCTGCTGATCCAAATTACAATCCATTCCGTGATCTGATAGATGATCCTGTTCACAAACATGCTCGCAGGGTTCTGTTATCTGTTGCAGTTTATGGGAGTCTGATTGTGATGCTGGTATTTTTGCCTGTCAAACTTGCCATGCGGATGACCCCTTCCCTTTTCCCACTTGACATATCGGTATCTGATCCATTCACCGAAATTCCAGCTGACATGCTTCTATTTCAGATTTGTATCCCATTCGCTATTGAGCATTTTAAATTGAGGACAACTATTAAATCCCTACTCCGCTATTGGTTTACTGCTGTTGGTTGGGCTCTTGGTTTGACTGATTTCTTACTGCCTAGACCTGATGACAGTGGTAATCAAGAAAATGGAAATGGGGAGCCAGCTAGGCAGGAAAGGCTGCAGTTAGTCCAAGCTGGGGTGCATGATCAGGGTATGGTGCCATTTGCAGGCGATGATTTGAACAGGGTCATTAACACAGCAGGAGAACTGAATGCTGGAGAGGATTATGATAATGATGAGCAATCTGACTCTGATTATGCCTTTGTGCTTCGCATTGTTCTTTTACTGGTGATTGCTTGGATGACTCTCCTCATCTTCAACTCTGCTCTGATAGTTGTACCGATTTCATTTGGACGGGCACTCTTCAATTCTATTCCTCGCCTTCCAATAACTCATGGCATTAAGTGCAATGATCTATACGCATTTATAATTGGAAGTTATGTGATCTGGACTGCTGTTGCTGGAGTTAGATACTCAATTGAGCAAATTAGGAAAAGGAGGGCTTCTGCTTTGTTTAGCCAAATATGGAAGTGGTGTGGCATTCTTGTGAAGAGTTCTGCTCTTCTGTCAATATGGATATTTGTCATCCCAGTACTAATTGGGCTTCTGTTTGAGCTTTTGGTAATTGTGCCAATGAGAGTTCCAGTGGATGAAAGTCCAGTATTCCTCCTTTATCAAGACTGGGCATTAGGCCTTATATTTCTCAAGATATGGACTAGATTGGTTATGTTGGACCACATGATGCCTCTCGTAGATGAAAGTTGGCGAGTAAAATTTGAGAGGGTGAGAGAGGATGGTTTCTCCAGGCTGCAAGGTCTTTGGGTCCTTCGGGAGATCGTACTTCCAATCATAATGAAACTATTGACAGCACTGTGTGTCCCTTACGTTTTGGCCAGAGGGGTGTTTCCAGTTTTTGGGTACCCCTTGGTGGTCAATTCTGCTGTCTATCGGTTTGCATGGCTGGGATGCCTCTGTTTCAGTTTCTTGTGCTTCTGTGCCAAGAGATTTCATGTCTGGTTCACAAATCTCCACAATTCAATACGTGACGACCGGTATCTGATTGGCCGGAGGTTGCATAACTACGGAGAACATGTTGAGAAGGCAAATGAAGCAGGAACTTCTACAGGGATGCAGGATACTATTTTACTAGGTACAGGTTTAAACGAACAAGATCGTGAAGCAGATGTTGGACTCCGGTTGAGGCGCGTAAATCAACAGGCGGGTTGA 3378 0.4479 MEIAHEPPASLDGSPIPADTLANSPSSSSSSSSSSSSSASSPRGSKGKEIEGTAPTTATAVTAVPARYDDDDEEEEDVCRICRNPGDTENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSLGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDAEREDEVDRNGARIARRPPGQANRNINGDGNGEDAGGAQGIAGAGQVIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIILHYLSWFFSTASGPVLSTVAPLADTSLSLANITLKNALTAVKNLSSDTQGNGSIEQVAEMLKVNGSGLSEVSNNISASVSADLLRGGSIGTSRLSDVTTLAIGYVFILSLIFCYFGIVALIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDICTIQMFGKTMVHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMTPSLFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPDDSGNQENGNGEPARQERLQLVQAGVHDQGMVPFAGDDLNRVINTAGELNAGEDYDNDEQSDSDYAFVLRIVLLLVIAWMTLLIFNSALIVVPISFGRALFNSIPRLPITHGIKCNDLYAFIIGSYVIWTAVAGVRYSIEQIRKRRASALFSQIWKWCGILVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLARGVFPVFGYPLVVNSAVYRFAWLGCLCFSFLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNYGEHVEKANEAGTSTGMQDTILLGTGLNEQDREADVGLRLRRVNQQAG* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1635 1125 MobiDBLite consensus disorder prediction 1 72 - -
Apr3g1635 1125 ProSiteProfiles Zinc finger RING-CH-type profile. 71 132 IPR011016 GO:0008270
Apr3g1635 1125 Pfam RING-variant domain 79 125 IPR011016 GO:0008270
Apr3g1635 1125 PANTHER SSM4 PROTEIN 67 1068 - -
Apr3g1635 1125 SUPERFAMILY RING/U-box 73 129 - -
Apr3g1635 1125 PANTHER ZINC FINGER, RING-CH-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 67 1068 - -
Apr3g1635 1125 SMART ringv_2 78 126 IPR011016 GO:0008270
Apr3g1635 1125 MobiDBLite consensus disorder prediction 17 44 - -
Apr3g1635 1125 CDD RING_CH-C4HC3_MARCH6 78 127 - -
Apr3g1635 1125 MobiDBLite consensus disorder prediction 248 282 - -
Apr3g1635 1125 ProSiteProfiles Zinc finger RING-type profile. 79 126 IPR001841 -
Apr3g1635 1125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 137 IPR013083 -
Apr3g1635 1125 Coils Coil 296 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1635 Apr-Chr3 31817118 31824969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1635 14 131 C3H Transcription Factor Family AT4G00335 30.469 1.31e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1635 K10661 - gmx:100813205 2014.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1635 3 31817118 31824969 Apr3g1635 3 31817118 31824969 ECH