Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1608 ATGTCTACAAACGAGGCCTCTAAAATAGAAGAAGGTGGAGTAAAGGCACAAAGAGATTCGGGCTTTTGTGGTTCTCCTGAGGTAGTTCAAGTTATACAAAAGGTAATTGCAGAGGTAATAGGGACATATTTCTTAGTATTTGCAGGGTGTTGCTCTGTTGTTTTGAATAAAATTGAGGGCAGTGAAGGGACAATAACGTTCCCTGGGATTTGTGCGGTATGGGGTTTGACGGTGATGATCCTAGTATATTCACTCGGTCACATCTCTGGTGCGCATTTCAATCCAGCAGTCACTGTCAGCTTTGCCATTTATCGCCATTTTCCTTTGAAACAGGTGCCACTATATCTTATTGCACAAGTATTAGGATCTATTCTTGCTAGTGGAACATTGTACCTTCTCTTTGATCTAAATGAGAAATCCTATTTTGGAACAGTTCCAACTGGGTCTCAAATTCAATCCCTTGTTTTTGAGCTACTCACATCATTTCTCTTAATGTTTGTTGTTTCTGCTGTGTCCACTGATAATAGAGCGATTGGAGAGCTAGCAGGCATTGCTGTTGGCATGACAGTGTTAATAGACGTCTTCATTGCTGGACCTGTGTCAGGAGCATCCATGAACCCAGCCAGAAGCCTTGGACCTGCTTTGGTGATGCACATTTATGATGGATTTTGGATTTATATTGTTGGACCATTTGTTGGAGCAATACTAGGTGCCTCAGTCTACAACTTGATTAGGTTTACCGACAAACCACTGAGAGAGCTCAGTTCAAGGCCAAGTTTTCTTAGCAGAGGAAGTTTTCGATAG 804 0.4192 MSTNEASKIEEGGVKAQRDSGFCGSPEVVQVIQKVIAEVIGTYFLVFAGCCSVVLNKIEGSEGTITFPGICAVWGLTVMILVYSLGHISGAHFNPAVTVSFAIYRHFPLKQVPLYLIAQVLGSILASGTLYLLFDLNEKSYFGTVPTGSQIQSLVFELLTSFLLMFVVSAVSTDNRAIGELAGIAVGMTVLIDVFIAGPVSGASMNPARSLGPALVMHIYDGFWIYIVGPFVGAILGASVYNLIRFTDKPLRELSSRPSFLSRGSFR* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1608 267 TIGRFAM MIP: MIP family channel proteins 37 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g1608 267 Pfam Major intrinsic protein 29 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g1608 267 PANTHER AQUAPORIN NIP2-1 8 260 IPR034294 -
Apr3g1608 267 CDD MIP 33 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g1608 267 PANTHER AQUAPORIN NIP4-1 8 260 - -
Apr3g1608 267 SUPERFAMILY Aquaporin-like 30 252 IPR023271 -
Apr3g1608 267 ProSitePatterns MIP family signature. 92 100 IPR022357 -
Apr3g1608 267 MobiDBLite consensus disorder prediction 1 21 - -
Apr3g1608 267 Gene3D Glycerol uptake facilitator protein. 3 253 IPR023271 -
Apr3g1608 267 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g1608 267 PRINTS Major intrinsic protein family signature 74 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g1608 267 PRINTS Major intrinsic protein family signature 111 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g1608 267 PRINTS Major intrinsic protein family signature 156 174 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g1608 267 PRINTS Major intrinsic protein family signature 187 209 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g1608 267 PRINTS Major intrinsic protein family signature 224 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1608 Apr-Chr3 31453968 31455689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1608 1 261 Major Intrinsic Protein MIP AT5G37820 60.985 8.20e-116 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1608 K09874 - gmx:100819179 401.749