Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1564 ATGATGTTTCCATTAGTTTTAGAGGTGAGGATACCCGGAACAACTTCACAAGCCACCTTCATGCTGCTTTTCACCGCAACAAAATCCAAACCTTCTAGATCACAGGCTTCCCAAAGGGGATCAGGTCTCTCCCTCGATTGTCAAAGCCTTCAAAGAGTCCACCTATCTGTGGTTGTTCTCTCCAAAGACTATGCTTCCTCCACCTGGGGCTTGAGTGAACTTGCCAAAATAATTGAACAAAAGAAACATGGTGTACACGTTGTTATACCCGTGTTCTATAAGATTGATCCTTCCCATGTGAGGAAGCAGACAGGAACTCACAAGATAGCTTTTGAAAAATATGAAAGAGATGTTAACCATAGCATGGCCAAGTTGTTGAAGTGGAAAGCTACTCTCACTTGGGTGGGAATCAAGGAATTATCGGATATTTTCACAGATGTTATGCAAAAACTGAATCGTATATATCCCACTGACATAAAAGAACTTGTTGGAATTGATCAAAATGTTGCTCCTATTGAATCATTATTGAGAATCAGGTCAAGAGAAGTTCGCATAATAGGGATTTGGGGCATGGGTGGAATGGATAAAACAACCATTGCCAATGATTTATTTGCCAAATTTTCTTCTCAATATGAAGAGGATTTGAATCTCCATATTAGCATCCCCGCAGTGAGATCCACTTTAGTTATGAGGAGGCCTAGCCAAAAAAAGGTTTTGACAGTTCCTGATGATGTGGACAATCCAAAGAAACTAGAACATCTTGCTGCACTACATGAGGGCATAATCTTAGATGGGCAGAACATGCTTCTTCCTTCAGGTCTTGAATCATTGTCTAGTAAATTAAAGCACCTACACTGGGATGGATACCCTTCCAAGTCTTTGCCATCAACTTTTTGTACGGACAACCTTGTCATGCTTTCCATGATGGGAAGTCATGTTGAAAAACTTTGGGATGGAATCAAGAGTCTTGCAAGCTTGAAAGGGAGCAACCTCCGTGCATGCAAGAATTTAACTGACCTCCCAAATTTTACGCTAGTGCCAAATCTTGAAATTGTTGATGATTCTCATTGCACTAGTCTGCTTCATGTATCCTCATCCATCCAATATATCAAGAAGCTTATTTTGTTTAACTTAGAATCCTGCAAGAATCTTAGTAGTCTTCTGGGAAACGTTCATCTGTTCTCTCTTGAAATGTTCATTCTCGAACACTGTTCAGGTCTTGGTGAGTTTTCAGTATCTTCAGAGAACATGATAGGCCTGGAGTTAAGAGAAACAGCAATAGCATATTTCCCAGAATCAGTTTGGCAGCATCTGAACCAGCTTGTTTACTTGAATCTGGAATCTTGCAACAAGCTCAAGCGTCTTCCAAGCAACATTCACTTAAAATCTCTTCAAAGACTCAATCTTAGAGATTGTTCAAGTCTTGAGGTGTTTTCTGTGACTTCAGAAAACATGGAATACCTGAATTTGAGAGGGACATCAATAAAATAA 1491 0.3991 MMFPLVLEVRIPGTTSQATFMLLFTATKSKPSRSQASQRGSGLSLDCQSLQRVHLSVVVLSKDYASSTWGLSELAKIIEQKKHGVHVVIPVFYKIDPSHVRKQTGTHKIAFEKYERDVNHSMAKLLKWKATLTWVGIKELSDIFTDVMQKLNRIYPTDIKELVGIDQNVAPIESLLRIRSREVRIIGIWGMGGMDKTTIANDLFAKFSSQYEEDLNLHISIPAVRSTLVMRRPSQKKVLTVPDDVDNPKKLEHLAALHEGIILDGQNMLLPSGLESLSSKLKHLHWDGYPSKSLPSTFCTDNLVMLSMMGSHVEKLWDGIKSLASLKGSNLRACKNLTDLPNFTLVPNLEIVDDSHCTSLLHVSSSIQYIKKLILFNLESCKNLSSLLGNVHLFSLEMFILEHCSGLGEFSVSSENMIGLELRETAIAYFPESVWQHLNQLVYLNLESCNKLKRLPSNIHLKSLQRLNLRDCSSLEVFSVTSENMEYLNLRGTSIK* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1564 496 Pfam TIR domain 53 148 IPR000157 GO:0007165
Apr3g1564 496 ProSiteProfiles TIR domain profile. 1 130 IPR000157 GO:0007165
Apr3g1564 496 PRINTS Disease resistance protein signature 185 200 - -
Apr3g1564 496 PRINTS Disease resistance protein signature 459 475 - -
Apr3g1564 496 Gene3D - 151 221 IPR027417 -
Apr3g1564 496 SUPERFAMILY L domain-like 263 495 - -
Apr3g1564 496 Gene3D Ribonuclease Inhibitor 234 414 IPR032675 -
Apr3g1564 496 Gene3D Ribonuclease Inhibitor 415 496 IPR032675 -
Apr3g1564 496 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 53 213 IPR044974 GO:0006952
Apr3g1564 496 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 268 453 IPR044974 GO:0006952
Apr3g1564 496 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 437 495 IPR044974 GO:0006952
Apr3g1564 496 SMART till_3 12 138 IPR000157 GO:0007165
Apr3g1564 496 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 437 495 - -
Apr3g1564 496 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 53 213 - -
Apr3g1564 496 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 268 453 - -
Apr3g1564 496 Pfam Leucine Rich Repeat 302 321 IPR011713 -
Apr3g1564 496 Gene3D - 24 150 IPR035897 -
Apr3g1564 496 SUPERFAMILY Toll/Interleukin receptor TIR domain 48 135 IPR035897 -
Apr3g1564 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 259 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1564 Apr-Chr3 30697775 30700031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1564 270 496 WRKY Transcription Factor Family AT4G12020 41.841 3.62e-32 129