Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1548 ATGGAAAGAGGCGCTTACAGAGGCAGAGGCAGAGGCAGTGGCCGCTACGGTCGCGGAAACGGTGGCAGAGGGAGAGGCAGTGCCAGTGCCAGTGCCAGTGGCAGAGGGTTCCCTTCTCCGTCACAACCACGTTATTCCCCAAGACCAAACCCCTCTTCCTCTGGTGAATCTTCAAAACCGAAACACCCTCAAACTCAAATTAATCAAGATTTTGGATCTCTGAAATTGTCAGAACAGAAAGTGGAAAATATAATCCCACCTGTGCACAGACCTGACAAGGGTGGAACGCTAGCAATTCGAACCTGCAATCTTCGCGTGAACCATTTTCGCGTTTTGTTCAATCCCCAAACCATAATCATGCACTACCACGTCGATGTCAAGCCCAAGGTACCCGCGAAGAACAACCGGCCTCAGAAGATTTCCAAGTTCGACTTGTCGTTGATTCGAGAAAAACTCTTCTCCGACCTCTCGCTGCCGTCCGAGAGGACGGCGTACGACGGCGAGAAGAGCATCTTCAGCGCGGTGCCGTTGCCGGAGGAAACATTCACCGTCGACGTGTCAAAGGGGGAGGATGAAAAAACGGTGGCGTATTTGGTGACTCTAACGCAGGTGAGCCAACTGGAGCTTCGCAAGTTAAGGGATTACCTAAGCGGAAGTGTGCTTTCCATTCCCAGGGATATTTTACAAGGCTTGGATTTGGTGGTGAAGGAAAATCCCGCGAAACGCACCGTTCCATTGGGAAGGTGCTTCTTCCCCTTTAACCCTCCGTTAAAAGAGAGAGACCTTCAGCCTGGGATAATTGCAATAGGAGGGTTTCAGCACAGTCTCAAACCCACTTCTCAGGGTCTCTCTTTGTGCCTTGATTATTCCGTTTTGTCGTTTAGGAAGAAAATGTCGGTCTTGGAATTCTTACAAGCTCACATTAAGGACTTCAAAGTGAGCGAGTTTTCCAGGTTCAGGAAACAAGTTGAGCAAGCACTTGTTGGGTTGAAAGTTAATGTCACCCACCGTAGGACCAAGCAGAAGTACACCATTGTGGCGTTGACGGCAAATATTACGAGGCATATCAATTTCACTGTTTCTGACCCCGAGGGTCGGAATCCTCCCAGGGATACTACTCTCCTTGATTACTTTTGGGAGAGGTATCATGTGGATGTTGAATACAAGGATATTCCTTCCTTGGATTTTGGAGGCAATAAGACAAATTATGTTCCTATGGAGTTGTGTGTCTTGGTTGAGGGCCAGAGATACCCTAAAGAGAATTTGGATAGAAATGCTGCCAGGGATCTGAAGAATATGTCGTTGGCGCATCCGAGGGAGAGGGAAGCTACGATACAGGCGATGGTGAGGTCGAATGATGGACCGTGCGGCGGCGGTATTATTCAAAGCTTTGGAATGAATGTCAACACTTCGATGACAAACGTGACAGGACGTGTACTTGAGCCCCCAAATTTGAAGTTAAGTGATCCAAATGGCAGGAGTATTAACATGCCACTGGATTCAAATAAATGTCAATGGAATCTACTAGGAAGATCGATGGTGGAAGGCAAGCCGGTTGAGTGTTGGGGGATTCTTGATTTTACCAGCCAGGAGTCTCAATGGCGCAGATTAAAAAGCAAACAATTCATTCAGAAGCTTATCGATAAATACAGAAAGTTGGGCATTGACATGAGGGAGCCAGTTTGGTATGAACCCTCTGACATGTGGAATCTTGAGGATTACAATTCTCTGTGCAAATTACTTGAAAAAATTGATGATAGGGTTCAAAAAAGGTGTCGACAACGGCTGCAATTTCTTCTGTGTGTGATGGCTGACAAACATCAAGGTTACAAGTGCCTCAAGTGGATTGCTGAGACCAAGGTTGGCATAGTGACACAATGTTGCCTGTCTGGTAATGCCAATGAAGCGAAAGACCAATATCTTACAAATCTTGCTCTCAAGATCAATGCCAAAATTGGAGGAAGTAATGTAGAGCTTATCAATAGGCTCCCACATTTTGAGGGTGATGGTCATGTTATGTTCATAGGAGCTGATGTCAATCATCCAGCATCTCGGGACACCAGTAGTCCATCAATTGCTGCAGTGGTTGCCACTGTTAACTGGCCTGCTGCAAATCGCTATGCTGCACGTGTTTGTGCTCAAGACCATCGTTTTGAGAAAATTTTGAATTTCGGAGATGTTTGCTTTGACCTTGTTTCGTATTATGAAAGGTTGAACAAAGTCAGGCCTGAAAAAATTGTTATCTTTCGTGATGGTGTGAGCGAGAGCCAATTTCAAATGGTTCTTGGAGAGGAGCTACAAGATTTAAAGGCAGTGTTTTGTCGCTCAAATTATTTCCCAACCATCACTCTTATTGTGGCACAAAAGCGACATCAAACACGATTTTTTCCTACGAGTGCGAGAGACGGGATTCCTAGTGGCAATGTGTTCCCTGGAACAGTTGTGGACACAAAAGTGGTACACCCTTTTGAATTTGACTTTTATCTTTGCAGTCACTACGGAAGCCTAGGTACAAGCAAGCCCACCCATTATCACGTCCTGTGGGATGATCACAAGTTTACTTCTGATGCTTTGCAGAAGCTCATATATGATATGTGCTTTACCTTTGCAAGGTGCACCAAACCTGTATCTTTAGTTCCCCCAGTATACTATGCTGATCTTACTGCTTATAGAGGAAGGTTATACTATGAAGCGATGCTTCGTATGCAGTCTCCGGCTTCAGCTGCATCTTCTTCATCGCATAATGCTTCTTCCTCGGTTTCTTCATCAGGCTCAAGTTTAAATGATCCAGGGTGTTACAAGTTGCATGCTGATGTGGAAAACATAATGTTCTTCATCTGA 2841 0.4558 MERGAYRGRGRGSGRYGRGNGGRGRGSASASASGRGFPSPSQPRYSPRPNPSSSGESSKPKHPQTQINQDFGSLKLSEQKVENIIPPVHRPDKGGTLAIRTCNLRVNHFRVLFNPQTIIMHYHVDVKPKVPAKNNRPQKISKFDLSLIREKLFSDLSLPSERTAYDGEKSIFSAVPLPEETFTVDVSKGEDEKTVAYLVTLTQVSQLELRKLRDYLSGSVLSIPRDILQGLDLVVKENPAKRTVPLGRCFFPFNPPLKERDLQPGIIAIGGFQHSLKPTSQGLSLCLDYSVLSFRKKMSVLEFLQAHIKDFKVSEFSRFRKQVEQALVGLKVNVTHRRTKQKYTIVALTANITRHINFTVSDPEGRNPPRDTTLLDYFWERYHVDVEYKDIPSLDFGGNKTNYVPMELCVLVEGQRYPKENLDRNAARDLKNMSLAHPREREATIQAMVRSNDGPCGGGIIQSFGMNVNTSMTNVTGRVLEPPNLKLSDPNGRSINMPLDSNKCQWNLLGRSMVEGKPVECWGILDFTSQESQWRRLKSKQFIQKLIDKYRKLGIDMREPVWYEPSDMWNLEDYNSLCKLLEKIDDRVQKRCRQRLQFLLCVMADKHQGYKCLKWIAETKVGIVTQCCLSGNANEAKDQYLTNLALKINAKIGGSNVELINRLPHFEGDGHVMFIGADVNHPASRDTSSPSIAAVVATVNWPAANRYAARVCAQDHRFEKILNFGDVCFDLVSYYERLNKVRPEKIVIFRDGVSESQFQMVLGEELQDLKAVFCRSNYFPTITLIVAQKRHQTRFFPTSARDGIPSGNVFPGTVVDTKVVHPFEFDFYLCSHYGSLGTSKPTHYHVLWDDHKFTSDALQKLIYDMCFTFARCTKPVSLVPPVYYADLTAYRGRLYYEAMLRMQSPASAASSSSHNASSSVSSSGSSLNDPGCYKLHADVENIMFFI* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1548 946 MobiDBLite consensus disorder prediction 1 67 - -
Apr3g1548 946 SMART Piwi_a_2 598 897 IPR003165 GO:0003676
Apr3g1548 946 Pfam Argonaute linker 2 domain 440 486 IPR032472 -
Apr3g1548 946 ProSiteProfiles Piwi domain profile. 598 897 IPR003165 GO:0003676
Apr3g1548 946 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 28 945 - -
Apr3g1548 946 Pfam PAZ domain 305 427 IPR003100 GO:0005515
Apr3g1548 946 Gene3D paz domain 293 417 - -
Apr3g1548 946 ProSiteProfiles PAZ domain profile. 298 413 IPR003100 GO:0005515
Apr3g1548 946 Pfam Piwi domain 599 896 IPR003165 GO:0003676
Apr3g1548 946 CDD Piwi_ago-like 460 896 IPR045246 -
Apr3g1548 946 SUPERFAMILY Ribonuclease H-like 582 897 IPR012337 -
Apr3g1548 946 Gene3D - 668 946 IPR036397 GO:0003676
Apr3g1548 946 MobiDBLite consensus disorder prediction 48 67 - -
Apr3g1548 946 SUPERFAMILY PAZ domain 294 452 IPR036085 GO:0005515
Apr3g1548 946 SMART PAZ_2_a_3 298 436 IPR003100 GO:0005515
Apr3g1548 946 Pfam N-terminal domain of argonaute 100 234 IPR032474 -
Apr3g1548 946 CDD PAZ_argonaute_like 298 412 - -
Apr3g1548 946 Pfam Argonaute linker 1 domain 246 296 IPR014811 -
Apr3g1548 946 Gene3D - 479 660 - -
Apr3g1548 946 SMART DUF1785_2 244 297 IPR014811 -
Apr3g1548 946 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 28 945 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1548 Apr-Chr3 30407278 30411543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1548 39 945 Eukaryotic Initiation Factors Gene Family AT1G48410 33.888 3.98e-152 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1548 K11593 - gmx:100805250 1419.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1548 3 30407278 30411543 Apr3g0391 3 7668914 7671779 PCT