Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1544 ATGAAAGAGAGTGGTAGGAAGCAAGGTGCACCTTCACCTTGTGCTGCATGCAAGCTCCTTCGGAGAAGGTGTGCTCAAGATTGTGTTTTTGCTCCTTATTTCCCCGCAGATGAGCCCCAGAAGTTTGCAAATGTTCACAAAGTGTTCGGTGCCAGCAATGTCAACAAGATGCTTCAGGACTTACCAGAGCATCAACGAGGTGATGCAGTAAGCAGCATGGTGTATGAGGCAAATGCAAGAGTAAGAGACCCTGTGTATGGATGTGTAGGGGCAATCTCATCTCTTCAGCAACAAATTGGTGCCCTACAAACCCAATTGGCCGTGGCCCAAGCTGAGGCAGTGCACCTAAGGGTGCGCCAAACTATGCCCATTTGGAACCCAGGACATAGCCCAACCAATAGTGCCTCTCAATCCTCCAAAATCATTGAATCTCAAGCCAATTCTGTTTTTGACATGGACATGATGGACCATGCTAGTTATGGTGATTCAATGTGGTGA 498 0.4779 MKESGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIGALQTQLAVAQAEAVHLRVRQTMPIWNPGHSPTNSASQSSKIIESQANSVFDMDMMDHASYGDSMW* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1544 165 Coils Coil 92 112 - -
Apr3g1544 165 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Apr3g1544 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 154 - -
Apr3g1544 165 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Apr3g1544 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1544 Apr-Chr3 30302431 30305797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1544 1 165 AS2 family AT1G31320 75.581 1.31e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr3g1544 LOB 1.1e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1544 - - pop:7477807 276.174