Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1540 ATGTTGCCTCGCAGATCAAGTCGAAGAGTGGGTAGTTTTACAGCTGAAGTAGAAAATGGAGCCCCATTACCACCGCCCAATCCTACCACAAATTTACAAGGGGATGAAGTTAAACCACTTTCTGGAAAACCATACTGTCTTATGATTCTTTCAAAAACAAATCTCAGTCCCCGTTATGCAATGGGGCCGTCCACCAGCATAAAGTTAAAACTTCCTTCTACTATGGTCCGTACTGTTCTCACATATAAGGGCAAGAGCTGGGACATGGTGTATAATGGACATAGAAAAGGATGGAAATTGTTTGCTGCCAAAGGCTGGAAAAAGTTTGCGGTTGATAATTGTTTGAAGATTGGAGATGCATGCATTTTAGAGCTCATGGAAAGCAGAAACAAGAAAATCATCTTCAATGTTCAAATTCTTAGAGGAGACATCCCATCCAAATTTCTTGAAAATGACACCATGGGTCAGACTGCAGAAATGGCAATTGTCATCGACTAA 498 0.4096 MLPRRSSRRVGSFTAEVENGAPLPPPNPTTNLQGDEVKPLSGKPYCLMILSKTNLSPRYAMGPSTSIKLKLPSTMVRTVLTYKGKSWDMVYNGHRKGWKLFAAKGWKKFAVDNCLKIGDACILELMESRNKKIIFNVQILRGDIPSKFLENDTMGQTAEMAIVID* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1540 165 SMART B3_2 50 143 IPR003340 GO:0003677
Apr3g1540 165 CDD B3_DNA 44 141 IPR003340 GO:0003677
Apr3g1540 165 SUPERFAMILY DNA-binding pseudobarrel domain 42 141 IPR015300 -
Apr3g1540 165 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS04G0386900 11 152 - -
Apr3g1540 165 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 11 152 IPR044837 -
Apr3g1540 165 MobiDBLite consensus disorder prediction 1 32 - -
Apr3g1540 165 Gene3D - 34 143 IPR015300 -
Apr3g1540 165 Pfam B3 DNA binding domain 73 134 IPR003340 GO:0003677
Apr3g1540 165 ProSiteProfiles B3 DNA-binding domain profile. 78 143 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1540 74 143 REM Transcription Factor Family AT4G33280 33.766 3.63e-07 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr3g1540 B3 3.1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1540 - - gmx:100804948 171.785