Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1539 ATGTTGGGTGGACTATACGGTGACCTACCTCCTCCTTCTTCAGCAGAAGAAGAAAAACCAACCCCCAATGTGTGGTCCTCAAGCACAAAGATGGCACCCGCAACCCTCCGAAAACCCGCTTCACTCTTCGCCCCACCCCAAACCCTTCTCAGATCGCAACCCAAACCAAAACCCACAATTAACCCTTCTTCGCTCCCCAAAACCGTTCTCTCTGTCTCATCAACACCCGCACCAGACGACGTCGTTCAACCCGCTCTCGTCGGGGTCCAATCCACGGTCTTAGAAGAGTACGACCCGGCCCGGCCCAATGATTACGAAGAGTACCGGAGAGAGAGGAAGCGCAAGGCCCGTGAGGCCGAGATGATGAGGGAATTGGAGCGGCGGCGACAGGAGGAGGAGGAGGAGGAGCGAGAGAGGGAGAGGGAGAGGGAGAGAGAGAGGGAAAGAGATTACGCTGGCGGTGATTCGAGGTTGAATATTTCCGGCGAGGAGGCGTGGAGGAGGCGTGCTGCGATGAGCGGGGGTGGGGGTGGGGGTGGCGGTGGGGCCGGGGCCGGGGCCGGGGCCGTGCCGAGGTCGCCATCACCGCCGGGGAATTCGGATGGTTTTAGCATTGGGAAGTCGGAGACAGGAGGGTTGGGGGTTGGGGCAGGTGGACAGATGACTGCGGCGCAGAGAATGATGGCGAAGATGGGGTGGAAGGAAGGGCAAGGGCTTGGGAAGCAGGAGCAAGGGATTACTACGCCGCTGATGGCAAAGAAAACGGATAGAAGAGCTGGGGTTATTGTGAATGCTAGTGATAATAATAAGAAAGTGAAGAGTGTTAACTTCAATGGTGTGCCTACTAAGGTTTTGTTGCTTAGGAACATGGTGGGTCCTGGCGAAGTAGATGATGAGCTGGAAGATGAGGTAGGTTCAGAATGTGCTAAGTATGGGACAGTAACTAGAGTTTTGATATTTGAGATAACAGAGCCAAATTTCCCAGTTGATGAAGCAGTAAGAATCTTTGTGCAGTTTGAGAGATCCGAAGAAACAACTAAAGCGCTTATTGACCTTGATGGTCGGTACTTTGGGGGTAGAGTTGTACGTGCCTCATTTTATGATGAGGAGAAATTTAGCAAGAATGAATTGGCTCCAATGCCAGGAGAAATTCCTGGCTACGCTTGA 1167 0.5347 MLGGLYGDLPPPSSAEEEKPTPNVWSSSTKMAPATLRKPASLFAPPQTLLRSQPKPKPTINPSSLPKTVLSVSSTPAPDDVVQPALVGVQSTVLEEYDPARPNDYEEYRRERKRKAREAEMMRELERRRQEEEEEERERERERERERERDYAGGDSRLNISGEEAWRRRAAMSGGGGGGGGGAGAGAGAVPRSPSPPGNSDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNNKKVKSVNFNGVPTKVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALIDLDGRYFGGRVVRASFYDEEKFSKNELAPMPGEIPGYA* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1539 388 ProSiteProfiles G-patch domain profile. 220 266 IPR000467 GO:0003676
Apr3g1539 388 SUPERFAMILY RNA-binding domain, RBD 286 372 IPR035979 GO:0003676
Apr3g1539 388 MobiDBLite consensus disorder prediction 99 154 - -
Apr3g1539 388 Gene3D - 279 377 IPR012677 -
Apr3g1539 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 369 IPR000504 GO:0003723
Apr3g1539 388 MobiDBLite consensus disorder prediction 1 215 - -
Apr3g1539 388 SMART G-patch_5 218 264 IPR000467 GO:0003676
Apr3g1539 388 PIRSF SPF45 3 384 IPR040052 GO:0045292
Apr3g1539 388 PANTHER SPLICING FACTOR 45 SPF45 1 379 IPR040052 GO:0045292
Apr3g1539 388 MobiDBLite consensus disorder prediction 53 78 - -
Apr3g1539 388 Pfam G-patch domain 223 262 IPR000467 GO:0003676
Apr3g1539 388 CDD RRM_UHM_SPF45 281 377 IPR034653 -
Apr3g1539 388 MobiDBLite consensus disorder prediction 19 34 - -
Apr3g1539 388 Coils Coil 105 150 - -
Apr3g1539 388 SMART rrm2_1 284 365 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1539 Apr-Chr3 30230126 30234519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1539 226 261 C2H2 Transcription Factor Family AT5G26610 61.111 1.34e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1539 K12840 - gmx:100800998 536.184