Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1506 ATGAGAGTCCTAAGTGTGACCCCAAAACCTCTTCTTCTACATCAACTTGAAAGCAGGGTCTTACACATGCAGAACCATGCACCCACATTCTATCTCTCTCACCTCTGCACAAACATGGAGACACTGAAGAAACTCCACGCTTCCCTCCTCATTCAGGGCCTCACCTCAAACATCTTCACCAACACCAAACTACTCTCTCTCTACGCATCCTTCGGTCTCATCAACGACGCTCGAACCCTCTTCAACCATTTCCCCTCCAACGACTTCTACTCCTTCAAACTCATGCTCCGCTCCTACTTCCTCAACGACATGCACTCCCACGTCGTTTCGTTCTACCATCTCATGCGCCTCTCCCTCCCCTTCCCCTTCCCCCACCCCCACCACGCTCTCCTCTTCTCCGTCGTTCTCAAATCCTCCTCCCACTTACGCGATCTCGTTCAAGGAACCATACTCCACTGCCACGTCATCAAAACCATCCCCCCCGATAGCTTCGTTCTCACGTGCCTTGTCGACGTCTACTCCAAATGCGGACGCGTTCGCTGTGCGCGTCGAGCGTTCGACGAAATACCTGACCCAAATGTCGTTTCGTGGACTTCTATGATCGTCGCGTACGTGCAAAACGACTGCGCGCGTGAAGGGTTGAGCTTGTTTAATGCGATGCGTGAAGGGTTTGTTGATGGGAATGAGTTCACTGTTGGGAGCTTGGTCACTGCTTGCACCAAATTGGGGTTTTTGCATCAGGGGAAGTGGGTTCATGGGTTTGTTATTAAGAATGGGATTGAGCTCAATTCGGTTTTGGCGACGTCGATTTTGAATTTGTACGTCAAGTGTGGGGATGTTGAGGATGCACGCGCCGTGTTTGACGAGCTTTCTGTTAATGATGATCTTGTTTCGTGGACGGCGATGATTGTGGGGTATAGTCAGAGAGGTTATCCACATTTGGCGTTGGAATTGTTCACTGATGAGAAGTGGTCGGGGATTTTGCCTAATTCGGTTACAGTTGCGAGTTTGTTATCTGCGTGTGGACAATTGGGAAATGCTGTTGTGGGAAAGTCGCTTCATGGTCTGGTGATTAAGTGTGGATTGGATGATAGTTCTTTGAGGAATGCTCTTGTTGATATGTATGCAAAGTGTGGGGCTGTTTTGGAGGCACTTTATGTGTTTGAAATGACTGAGGAGAAGGATGTTGTATCTTGGAATTCGATTATTTCTGGTTGTGCTCAGAGTGGTTTTGCGAGTGAGGCTCTTGAGATCTTTCGAAGGATGAGATTAGAATCGTTTGAGCCTGATGCAGTTACTCTGGTGGGTGTTCTCTTGGCGTGTGCTTCCCTTGGTGCTCTTCACTTTGGTTGTTCTGTTCATGCTTTCTCTTTGAAGAATGGCCTGGTGTGGTCTAGTGTCTATGTTGGGACTGCGCTGCTGAATTTTTATGCAAAATGTGGGGATGCAAAATCGGCTAGGATGGTGTTTGATGGGATGGGGGAGAGGAATACTGTGACGTGGAGTGCAATGATTGGTGGGTATGGCATGCAAGGTGATGGCAGTGGATCTCTTGCGCTTTTCAGAGATATGCTGAAAGCGGAACTTGTTCCTAATGAAGTTGTATTTACAACTATATTAGCAGCTTGCAGCCATTCGGGAATGGTTGGAGAAGGGTCGAGGTTGTTTAATTTGATGTGTCGAGAGTTGAATTTTGTTCCTTCCATGAAGCACTATGCGTGCATGGTTGATCTGTTGGCCCGTGCTGGCAACCTTGAAGAGGCATTGGACTTCATTGAAAAAATGCCTGTTCAACCTAGTGTTAGTGTGTTTGGAGCTTTTCTCCATGGATGTGGACTTCATTCAAGGTTTGAATTGGGAGAAGTGGCAATTAAGAGAATGTTGGAGTTGCACCCTGATCAAGCTTGTTACTATGTGCTTGTGTCAAACCTGTATGCTTCAGATGGAAGATGGGGCTTGGTTAAGCAGGTGAGAGAGATGATAAAGCAAAGAGGATTGAACAAGGTCCCTGGTTGTAGTTTAGTGGAGATGGATCTCAACAATGATACATATCCCAAAGTGGCAGTTCTATCTTAA 2076 0.4721 MRVLSVTPKPLLLHQLESRVLHMQNHAPTFYLSHLCTNMETLKKLHASLLIQGLTSNIFTNTKLLSLYASFGLINDARTLFNHFPSNDFYSFKLMLRSYFLNDMHSHVVSFYHLMRLSLPFPFPHPHHALLFSVVLKSSSHLRDLVQGTILHCHVIKTIPPDSFVLTCLVDVYSKCGRVRCARRAFDEIPDPNVVSWTSMIVAYVQNDCAREGLSLFNAMREGFVDGNEFTVGSLVTACTKLGFLHQGKWVHGFVIKNGIELNSVLATSILNLYVKCGDVEDARAVFDELSVNDDLVSWTAMIVGYSQRGYPHLALELFTDEKWSGILPNSVTVASLLSACGQLGNAVVGKSLHGLVIKCGLDDSSLRNALVDMYAKCGAVLEALYVFEMTEEKDVVSWNSIISGCAQSGFASEALEIFRRMRLESFEPDAVTLVGVLLACASLGALHFGCSVHAFSLKNGLVWSSVYVGTALLNFYAKCGDAKSARMVFDGMGERNTVTWSAMIGGYGMQGDGSGSLALFRDMLKAELVPNEVVFTTILAACSHSGMVGEGSRLFNLMCRELNFVPSMKHYACMVDLLARAGNLEEALDFIEKMPVQPSVSVFGAFLHGCGLHSRFELGEVAIKRMLELHPDQACYYVLVSNLYASDGRWGLVKQVREMIKQRGLNKVPGCSLVEMDLNNDTYPKVAVLS* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1506 691 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 45 689 - -
Apr3g1506 691 Pfam E motif 614 676 IPR046848 -
Apr3g1506 691 Gene3D Tetratricopeptide repeat domain 471 681 IPR011990 GO:0005515
Apr3g1506 691 Gene3D Tetratricopeptide repeat domain 11 125 IPR011990 GO:0005515
Apr3g1506 691 TIGRFAM PPR: pentatricopeptide repeat domain 534 568 IPR002885 -
Apr3g1506 691 TIGRFAM PPR: pentatricopeptide repeat domain 268 291 IPR002885 -
Apr3g1506 691 TIGRFAM PPR: pentatricopeptide repeat domain 572 595 IPR002885 -
Apr3g1506 691 TIGRFAM PPR: pentatricopeptide repeat domain 195 222 IPR002885 -
Apr3g1506 691 TIGRFAM PPR: pentatricopeptide repeat domain 397 431 IPR002885 -
Apr3g1506 691 TIGRFAM PPR: pentatricopeptide repeat domain 499 533 IPR002885 -
Apr3g1506 691 Gene3D Tetratricopeptide repeat domain 363 450 IPR011990 GO:0005515
Apr3g1506 691 Gene3D Tetratricopeptide repeat domain 138 244 IPR011990 GO:0005515
Apr3g1506 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Apr3g1506 691 Gene3D Tetratricopeptide repeat domain 245 362 IPR011990 GO:0005515
Apr3g1506 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Apr3g1506 691 Pfam PPR repeat family 496 543 IPR002885 -
Apr3g1506 691 Pfam PPR repeat family 394 442 IPR002885 -
Apr3g1506 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Apr3g1506 691 PANTHER OS07G0578800 PROTEIN-RELATED 45 689 IPR045215 GO:0003723|GO:0009451
Apr3g1506 691 Pfam PPR repeat 297 319 IPR002885 -
Apr3g1506 691 Pfam PPR repeat 195 222 IPR002885 -
Apr3g1506 691 Pfam PPR repeat 166 189 IPR002885 -
Apr3g1506 691 Pfam PPR repeat 572 595 IPR002885 -
Apr3g1506 691 Pfam PPR repeat 268 290 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1506 Apr-Chr3 29855146 29857961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1506 43 677 Glycoside Hydrolase AT3G49170 32.716 1.80e-100 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1506 - - lang:109330587 1019.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1506 3 29855146 29857961 Apr3g1506 3 29855146 29857961 ECH