Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1495 ATGGTGAACAAGAAAAAGAAAAGGGAAGGTAAAGGAGGACAAAACAAAAGTGAAGGGAATAAAATTGAATGGGAACAACTAAGAGAGGAGGCAGCATCAGTAGCTGCTGTTCTACTTGGAGCAAGAAGAGCCAAAAAACGTTACATTGGGGTGCGTCAAAGGCCTTCGGGAAGATGGGTGGCTGAAATCAAAGACACCATTCAGAACATTAGACTATGGTTAGGAACTTATGACACTGCTGAAGATGCTGCTAGAGCTTATGATGAAGCAGCTCGTTTGCTTAGAGGTGCCAACACTCGCACAAACTTCTTTCTATGCCAATCTTCCCATTCTGTTCCTGCTCTTCCTCCAAAGATTGCCAAACTCCTCCTTCTTAGGCTCAAAGCTAGAAGCATTGCCTCTTCTTGCATGGTTACTACTCCTTTTCCTATTAACCACTTTGAGCAAGAAACAGAAGCAGACCCAGAACCTCATTTTCATCACCAAATAAAAGAACAGCACTTTGAGAATCTTCTAGATATGGCAGGAAATGGGGTTGTTGCTGAAGGTTGTGATGGTGCTCGTTCTGATTCTTCTACCATAACTACTTGTGACATCAGCTGTGGAACTAAAGAAGAAAATTGTAACCAAGAGGGTAGTAGGGAGGATTTCAGATTGGGGTATCATTGTGTTAACAGTGTTGGTGATGAAAACAATCAGATTATGAGGCCTAAAGGAGAGTTTGAAGTCTGTGATGTTGAGATCATGGACTTGCAGTTTTTGGATTCTGGCGGGTCATTGAGTTACTCTTTTTCTCCATTTGAGATAGCAGAGGAGATGATGGGACCAATGGAGGAAGAGAAATATGATGTGGATGATTCAACATTGCTTAGAGAAACTTTCAGGATGAAGTATGAACGTAAATTCTCAGCTTGTCTTTACACCATAATTGGGGTGTCTGAGTGTTTGAGGCTACAAGTTGGACCAGAAAGGTGCATGTCAAAGAGGCACATGTTGAAGAGCGTAGCTAAGGTTGTGATTAGATTCACAAAGAAGAATATCTCTTTGAAGACAGTGATGGTGAATCTCCTTATAGAACTGGCTCTAAGACAAATTTTAAGACACCAGCTGGTTAAGCTTGGCGGTAATGAACCTAACACAGAATAA 1146 0.4154 MVNKKKKREGKGGQNKSEGNKIEWEQLREEAASVAAVLLGARRAKKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTAEDAARAYDEAARLLRGANTRTNFFLCQSSHSVPALPPKIAKLLLLRLKARSIASSCMVTTPFPINHFEQETEADPEPHFHHQIKEQHFENLLDMAGNGVVAEGCDGARSDSSTITTCDISCGTKEENCNQEGSREDFRLGYHCVNSVGDENNQIMRPKGEFEVCDVEIMDLQFLDSGGSLSYSFSPFEIAEEMMGPMEEEKYDVDDSTLLRETFRMKYERKFSACLYTIIGVSECLRLQVGPERCMSKRHMLKSVAKVVIRFTKKNISLKTVMVNLLIELALRQILRHQLVKLGGNEPNTE* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1495 381 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Apr3g1495 381 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 328 - -
Apr3g1495 381 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Apr3g1495 381 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Apr3g1495 381 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 328 - -
Apr3g1495 381 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Apr3g1495 381 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Apr3g1495 381 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Apr3g1495 381 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Apr3g1495 381 MobiDBLite consensus disorder prediction 1 21 - -
Apr3g1495 381 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1495 Apr-Chr3 29645337 29648263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1495 45 103 AP2-EREBP Transcription Factor Family AT5G19790 77.966 4.94e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr3g1495 AP2 5.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1495 K09286 - gmx:100793940 392.889