Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1490 ATGGCTACTGTCTTTTCCATATGTTCAGGTTCTGCTTTTCTTTCTCACAGCAGGAGCTTCCCCTTTGCATCCAAGGGTTCACTCCTTCACCCCAAAAGGCCACTCTCAGCGAAGTGTGAAGCTTCTTTGGGAACTGAGATATCAGTGCCTCCAGCAGTTGACACCTTCTGGCAGTGGCTTAAAGAAGAAGGTGTTGTTTCTGCAAAGACCCCAGTGAAGGCTGGTGTGGTCCACGAAGGCATAGGACTTGTTGCCCTCAAAGACATTTCTAGGAATGATGTTGTGTTGCAGGTTCCCAAGAGGCTTTGGATTAACCCTGATGCTGTCGCTGCTTCAGAGATTGGGAATGTGTGCAGTGGCTTGAAGCCTTGGTTGGCTGTTGCACTTTTCTTGATCAGAGAGAGGTCAAGGGATGATTCTCTTTGGAAGCACTACTTCACTATTCTGCCAAAGGAAACTGATTCTACTATTTATTGGTCAGAGGAGGAGCTGTCAGAGCTACAAGGGACTCAACTTCTGAGCACAACACTGAGTGTGAAAGAGTATGTGCAGAGTGAATTTAGGAGACTGGAAGAAGATATCATACTCCCTAATAAGCAGCTTTTCCCTTTTCCTATTACACTTGATGACTTCTTCTGGGCATTTGGAATTCTAAGATCAAGGGCATTTTCTCGCCTTCGCAATGAAAATCTGGTTGTGATTCCATTCGCAGACTTGATAAACCATAGTGCCAGAGTAACTACAGAAGATCATGCTTATGAAATTAAAGGAGCAGCTGGTCTCTTCTCCTGGGATTACCTATTTTCCCTAAGGAGCCCCCTTTCTGTTAAGGCTGGGGACCAGGTATACATTCAATATGATTTAAAGAAAAGCAATGCTGAGTTGGCTCTGGACTACGGTTTCGCTGAACCAAATGCAGATCGGAATGCATATACCCTGACACTGCAGATATCAGAATCCGACCCCTTTTTTGATGACAAACTAGACATTGCTGAGTCCAATGGTTTTGGTGAGACAGCATACTTTGACATCTTCTACAGCCGCCCACTTCCGCCTGGGTTGCTTCCATATCTGAGACTAGTAGCTCTCGGGGGTACTGACGCTTTCCTATTGGAGTCACTATTTAGAAACTCCATCTGGGGTCATCTTGAATTGCCTGTGAGTCGTGACAACGAGGAGTTAATATGCCGAGTGGTTCGAGAAGCCTGCAAATCTGCCCTTGCTGGTTATCATACTACTATTGAAGAGGATCAAAAGCTGAAAGAAGCAAGTCTAGATTCAAGACTTGCTATAGCAGTTGAAGTTAGACAAGGGGAGAAGAAGGTCCTACAGCAAATCGATGAGATATTCAAAGAGAAAGAAAAGGAATTGGACCAGTTAGAATATTATCAAGAAAGGAGGCTCAAGGACCTTGGACTTTGCGGGGAAAATGGTGATATCCTTGGGGACCTTGGAAAATTCTTTTAG 1467 0.4472 MATVFSICSGSAFLSHSRSFPFASKGSLLHPKRPLSAKCEASLGTEISVPPAVDTFWQWLKEEGVVSAKTPVKAGVVHEGIGLVALKDISRNDVVLQVPKRLWINPDAVAASEIGNVCSGLKPWLAVALFLIRERSRDDSLWKHYFTILPKETDSTIYWSEEELSELQGTQLLSTTLSVKEYVQSEFRRLEEDIILPNKQLFPFPITLDDFFWAFGILRSRAFSRLRNENLVVIPFADLINHSARVTTEDHAYEIKGAAGLFSWDYLFSLRSPLSVKAGDQVYIQYDLKKSNAELALDYGFAEPNADRNAYTLTLQISESDPFFDDKLDIAESNGFGETAYFDIFYSRPLPPGLLPYLRLVALGGTDAFLLESLFRNSIWGHLELPVSRDNEELICRVVREACKSALAGYHTTIEEDQKLKEASLDSRLAIAVEVRQGEKKVLQQIDEIFKEKEKELDQLEYYQERRLKDLGLCGENGDILGDLGKFF* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1490 488 CDD SET_RBCMT 64 302 IPR044431 GO:0016279|GO:0018022
Apr3g1490 488 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 19 486 IPR011192 GO:0009507|GO:0030785
Apr3g1490 488 SUPERFAMILY SET domain 51 307 IPR046341 -
Apr3g1490 488 Gene3D - 303 467 IPR036464 -
Apr3g1490 488 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 310 481 IPR036464 -
Apr3g1490 488 Gene3D set domain protein methyltransferase, domain 1 49 301 - -
Apr3g1490 488 Pfam SET domain 80 286 IPR001214 GO:0005515
Apr3g1490 488 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 35 479 - -
Apr3g1490 488 PIRSF RMT_SET 1 487 IPR011192 GO:0009507|GO:0030785
Apr3g1490 488 Pfam Rubisco LSMT substrate-binding 319 443 IPR015353 -
Apr3g1490 488 SMART set_7 68 293 IPR001214 GO:0005515
Apr3g1490 488 ProSiteProfiles SET domain profile. 63 287 IPR001214 GO:0005515
Apr3g1490 488 PANTHER [FRUCTOSE-BISPHOSPHATE ALDOLASE]-LYSINE N-METHYLTRANSFERASE, CHLOROPLASTIC 35 479 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1490 56 242 NAC Transcription Factor Family AT3G56570 27.411 6.40e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr3g1490 SET 3.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1490 K00592 - gmx:100818113 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1490 3 29575749 29578988 Apr3g1490 3 29575749 29578988 ECH