Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1487 ATGGGTAGGTCACCGTGCTGTGAAAAGGTGGGGCTGAAGAAAGGGCCATGGACTCCTGAGGAAGATCAAAAGCTCATGGCTTACATTGAAGAGTTTGGCCATGGAAGCTGGCGTGCATTGCCAGCCAAAGCTGGCCTTCAAAGATGTGGGAAAAGCTGCAGACTAAGGTGGACTAACTACCTCCGACCTGACATAAAAAGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACAATCATTCAACTTCACGCCCTTCTTGGAAACAGATGGTCAGCAATAGCGGCTCAACTTCCCAAGAGAACCGACAACGAGATAAAGAACTATTGGAACACACACCTGAAGAAGAGGCTAACAAGAATGGGGATAGACCCTACAACCCACAAGCCTAAAACCGATGCTCTCGGTGGTTCGGGTAGTTGCCAGTCCAAGGACGTAGCCAACCTGAGCCACATGGCTCAGTGGGAGAGTGCTCGGCTCGAAGCCGAAGCAAGATTGGTGAGAGAATCAAAGTTGCAAGTCCAGAACAACCTCGGATCCTGCTCCTCCCCACAACCCGCGAGACTCGTCCTCAACAAAATCACAACGCAACAACCATCACTACCACCTTGCCTTGACGTGCTCAAAGCGTGGCAAAGCTCATGGTCGAAGCCACAACCAACAACAACAGGAACAAAAGACAACAACAAAATAATGCATAGCATGTATGCCATGATGCTATCCACTGATGACACCCTCGAGTCTCCCACGTCCACGCTGAACTTCCCAGGAACAGTGCTTCCTGTCCCCACCAACAACGTCGGAGTAATATTCAATGAAAACAATAACTTACTCCCTCTCACCACGACTACAAATGCCACACCAAACCCGTGTGAGGGTGGGTTCATGAAAGGGATTAGTGATCACAACACAATGTTACACTTGCAAGACGATGATATCATGGCGGCTGTGGAAGCATTTAGATCAAACACAACAAGGTACAAAAACAACAGCAACAACAATAATGTTGCTCCAGCACTCTCGTCCAATGTCGTCCTCGAAGGACTCAACAATGATGATGCCTTGGTTTATGATTCCAACGATAACTTAGCCTCGCAAGAAGAAAACTTGGCAATCATTAACGGGGATGGAAGCATCTGCAACGTGAGCCTCGAAGAGAATAATAAGCATTACTGGAATAACATACTTAATTTGGTGAATGACTCGCTGCAGTCTGATTCGTCTGTCTTCTGA 1227 0.476 MGRSPCCEKVGLKKGPWTPEEDQKLMAYIEEFGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDALGGSGSCQSKDVANLSHMAQWESARLEAEARLVRESKLQVQNNLGSCSSPQPARLVLNKITTQQPSLPPCLDVLKAWQSSWSKPQPTTTGTKDNNKIMHSMYAMMLSTDDTLESPTSTLNFPGTVLPVPTNNVGVIFNENNNLLPLTTTTNATPNPCEGGFMKGISDHNTMLHLQDDDIMAAVEAFRSNTTRYKNNSNNNNVAPALSSNVVLEGLNNDDALVYDSNDNLASQEENLAIINGDGSICNVSLEENNKHYWNNILNLVNDSLQSDSSVF* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1487 408 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr3g1487 408 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr3g1487 408 CDD SANT 69 112 IPR001005 -
Apr3g1487 408 CDD SANT 16 61 IPR001005 -
Apr3g1487 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr3g1487 408 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 400 - -
Apr3g1487 408 Gene3D - 69 116 - -
Apr3g1487 408 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr3g1487 408 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 400 - -
Apr3g1487 408 SMART sant 66 114 IPR001005 -
Apr3g1487 408 SMART sant 13 63 IPR001005 -
Apr3g1487 408 Gene3D - 13 66 - -
Apr3g1487 408 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr3g1487 408 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr3g1487 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1487 Apr-Chr3 29534934 29536716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1487 1 263 MYB Transcription Factor Family AT3G01140 61.765 2.96e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr3g1487 Myb_DNA-binding 3.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1487 K09422 - gmx:100809025 598.971