Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1486 ATGGTTACCACACAATCTGCAAAAGATGAAGAGTACTTGCAATTTCTCAGATCCAAAGCCACAGAGCTTTTCATCAGAGAAGAATGGAAGGACTCGATCGATGCCTATTCCCACTTCATCACCGTCTGCACCCAAAAACCCTCTCACCTCCAAAAGCTTCGAAAATCCCTCTGCATAGCTCTATGCAACCGTGCTGAAGCAAGGTCCAAGTTGAAGGACTTTCACTGTGCTTTGCAAGATTGTGATCATGCTTTGGAACTGGACCCAACTCACTCCAAGACCCTTTTGTGCAAAGGGAAGATCTTGCTTTGGCTCAACAAGTACTCCATGGCCATGGAATGCTTCAGAACCGCTATGCTTGACCCTCAACTTGGTGGGAACTCTGAATGCCTAAGTGGGTATTTGGAGAAATGCAAAAAGTTGGAATTTTTATCAAGGACTGGGTCTTTGGACCTCTCAGATTGGGTTGCAAATGGGTTTCGTGGCAAGATTCCAGAACTTGCTGAGTTCATTGGTGCAGTGCAGATCAAGAAATCTGAGATCAGTGGTCGTGGATTGTTTGCAACTAGGAACATTGATGCAGGGTCTTTGATCCTGGTCACCAAGGCAATAGCAGTGGAGAGGAGTATATTGGGAGGGAAAGATCTGAGTGAGGAGGCACAGTTAGCTATGTGGAAGAATTTCATTGATAAAGTTTCTGACTTTGTTGGAAAATGTCACCAAACGAGGGGTTTGATTGGTTTGTTGTCAAGTGGGGAGGAAAATGAGGATGAACTTGAGGTGCCTAATGTGGATCTCTTTAGGCCTGAGAGTTTGGAGAGTGTGAAGTCTTCTGAGGAGGTTGATATGGTTAAGTTACTTGCTATTTTGGATGTCAATTCTCTCACTGAGGATGCTGTTTCAGCCAATGTGTTGAGGAAGAACAACGATTGTTATGGTGTTGGGTTGTGGCTGCTCCCTTCGTTTATAAACCACTCGTGTTGTCCCAATACAAGAAGATTGCATGTTGGGGACTACTTGATAGTTCATGCTTCTAAAGATTTGAAGGCTGGTGAAGAGGTAACTTTTGCTTACCTTGATCCTTTGTCTCCATTGAGCAAGAGAAAGGATATGTCAGTGAATTGGGGGATTCATTGTAAGTGCAAGAGATGCAAGTTTGAGGGGGAAGTGTTCTCCAAACAAGAGATAAAAGAGATTGAGATTGGTCTTGAAAGAGGGATGGATGTGGGGGGTGTGGTATTTAAGTTAGAAGAACAAATGAAGAGGTGGAAAGTGAGGGGCAAAGAGAAAGCCTATTTGAGGGCATCATTTTGGAGTGCATATTCAGAGGCTTATGGGTCAGAGAGGGTTATGAAGAGGTGGGGAAGGAGGATTCCTACACTGGATGCTGTGGTTGATAGCATCTCAGATGTTGTGGGTGGTGACCACAGGTTACTTAAGTTGCTGATGGAGGAGTTGAAGAAAAATAGTGGTGGCCATGTGGAGATGGAAAAAATCTTCAAGTTGGGAAGAGAGGTGTTTGGGAAGGTAGTGAAAAAGCAAGCAATGAAAACACTTCTTGAGCTTTGCGTTAGTGATTGA 1581 0.4409 MVTTQSAKDEEYLQFLRSKATELFIREEWKDSIDAYSHFITVCTQKPSHLQKLRKSLCIALCNRAEARSKLKDFHCALQDCDHALELDPTHSKTLLCKGKILLWLNKYSMAMECFRTAMLDPQLGGNSECLSGYLEKCKKLEFLSRTGSLDLSDWVANGFRGKIPELAEFIGAVQIKKSEISGRGLFATRNIDAGSLILVTKAIAVERSILGGKDLSEEAQLAMWKNFIDKVSDFVGKCHQTRGLIGLLSSGEENEDELEVPNVDLFRPESLESVKSSEEVDMVKLLAILDVNSLTEDAVSANVLRKNNDCYGVGLWLLPSFINHSCCPNTRRLHVGDYLIVHASKDLKAGEEVTFAYLDPLSPLSKRKDMSVNWGIHCKCKRCKFEGEVFSKQEIKEIEIGLERGMDVGGVVFKLEEQMKRWKVRGKEKAYLRASFWSAYSEAYGSERVMKRWGRRIPTLDAVVDSISDVVGGDHRLLKLLMEELKKNSGGHVEMEKIFKLGREVFGKVVKKQAMKTLLELCVSD* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1486 526 ProSiteProfiles SET domain profile. 172 359 IPR001214 GO:0005515
Apr3g1486 526 Pfam SET domain 183 358 IPR001214 GO:0005515
Apr3g1486 526 Gene3D Tetratricopeptide repeat domain 4 142 IPR011990 GO:0005515
Apr3g1486 526 SUPERFAMILY TPR-like 9 119 IPR011990 GO:0005515
Apr3g1486 526 CDD SET_SMYD 287 384 - -
Apr3g1486 526 Gene3D SET domain 271 388 IPR046341 -
Apr3g1486 526 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 4 491 - -
Apr3g1486 526 SUPERFAMILY SET domain 173 385 IPR046341 -
Apr3g1486 526 SMART set_7 172 365 IPR001214 GO:0005515
Apr3g1486 526 SMART tpr_5 58 91 IPR019734 GO:0005515
Apr3g1486 526 SMART tpr_5 92 124 IPR019734 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr3g1486 SET 3.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1486 - - mtr:MTR_4g082140 827.394