Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1485 ATGGAGGGCACCACAAGCTCTGAACTCCCACCAGGCTTTAGGTTTCACCCAACCGATGAAGAACTAATAGTGTATTACCTTTGTAACCAAGCCACATCAAAGCCTTGCCCTGCATCTATCATCCCAGAAGTGGATATCTACAAGTTTGATCCATGGGAATTGCCAGATAAAAGCGAGTTTGGAGAAAATGAATGGTATTTCTTTAGCCCAAGAGACAGGAAGTACCCAAATGGAGTGAGGCCTAACCGAGCAACAGTGTCTGGGTATTGGAAGGCCACTGGCACAGACAAGGCAATCTATAGTGGATCTAAGCATGTTGGGGTGAAGAAGTCTTTGGTGTTTTACAAGGGTAGGCCACCAAAGGGTGTCAAGACTGATTGGATTATGCACGAGTATAGACTAGCTGAATCAAAAAAACAAGCTAGCAGGAAAATTGGGTCATATCAGCTGGATGAATGGGTCTTGTGCAGGATCTATAAGAAGAAGCACATGGGAAAATCATTGGTGCAGGAGGAATATTCAAGTGTCCAAATTAGTAATCTTACAGCAGCAAATAATGATGATGAACAGAAAATTATGAACCTTCCTAGGACTAGTTCCCTTACCTATCTTCTGGATATGAATTACTTGTGTCCAATTTTATCTGATGGCTCCTATTGCTCAGCCTTTGATTTTCAAATTAACACTAGCCATATAGGAATAGACCCTTTTGTAAAATCTGAACAGGTTGAAATGACCAACCATCACTTAGCAGATTCAGGGAAGTTCCAAGTGAAGCAGAGTAGCACACCGTGGACCAGCCCATATTTGTGA 813 0.4231 MEGTTSSELPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDIYKFDPWELPDKSEFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIYSGSKHVGVKKSLVFYKGRPPKGVKTDWIMHEYRLAESKKQASRKIGSYQLDEWVLCRIYKKKHMGKSLVQEEYSSVQISNLTAANNDDEQKIMNLPRTSSLTYLLDMNYLCPILSDGSYCSAFDFQINTSHIGIDPFVKSEQVEMTNHHLADSGKFQVKQSSTPWTSPYL* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1485 270 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
Apr3g1485 270 PANTHER NAC TRANSCRIPTION FACTOR 56 5 219 - -
Apr3g1485 270 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Apr3g1485 270 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Apr3g1485 270 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Apr3g1485 270 PANTHER BNAC06G30680D PROTEIN 5 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1485 Apr-Chr3 29467972 29469912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1485 1 256 NAC Transcription Factor Family AT1G69490 60.662 3.21e-110 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr3g1485 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1485 - - gmx:100785110 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2334 2 28184451 28187328 Apr3g1485 3 29467972 29469912 PCT