Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1480 ATGGGGGTTTGCTTTAGCACCCAAATTAAAACTGAGAGCCCATTTAACACTGGGTTAAGTTCAAAGTATGTGAGTGCCAATAAAAAAGATCTCAATCCATGTAATGAAGTTTACAATGATGTCATCAGCCCAAGTAGTGAAGTCTCGGTGCCCCAGACTTCAAAGAATGAGGGTGAGATTTTGGAGTCATCCAATCTCAAAAGCTTTAGTTTGACAGAACTTACGGCTGCAACCAGAAATTTCCGTTCAGATAGTGTGTTAGGAGGTGATTTTGGATCAGTTTTTAAGGGTTGGATTGATGATCACTCACTTTCAGCTGCCAAACCTGGCACGGGCATTGTTGTTGCTGTGAAAAGACTTAATCAGGAGAGCTTCCGATGTCACAAGGAGTGGTTGGCAAGGCATGGTATGATTCACGAAGCAAGTCTCGAGGTGCCTTATCTCATCCATGCTGAAGTAAACTATCTAGGCCAGCTTTCACATCCTCATCTAGTGAAATTGATTGGATATTGCTTTGAAGATAAAAATCGCCTTCTGGTATATGAATTTATGCCTCGTGGTAGCTTGGAGAATCACTTGTTCATGAGAGGCTCATACTTCCAACCACTTTCTTGGGGCCTTCGTTTGAAAGTAGCTCTTGGTGCTGCCAAGGGGCTTGCATTTCTTCACAGAGCTGAAACAAAAATGATATATCGAGATTTTAAGACTTCAAATGTCTTGCTGGATTCAAATTATAATGCAAAGCTTTCAGATTTTGGGCTGGCAAAGGACGAACCAAGCGGTGATAATAGTCATGTCTCCACAAAGGTAATGGGAACCTACGGATATGCAGCTCCTGAATATCTAGCCACAGGTCATCTCACTGCTAAGAGTGATGTCTTCAGTTTTGGAGTTGTGCTGTTGGAAATGCTATCAGGGAGAAGGGCTATTGACAAGAATAGACCAAAGGGACAGCAAAATTTGGTGGAATGGGCCAAACCATACCTAGCCAACAAGCATAAGCTTTTACGTGTATTGGATAACCGTCTTGAAGGCCAATATGCATTAGACGAGGCCCATAAAGTAGCTACCCTGTCTCTACAATGCCTTGCAACAGAATCCAAGTTGAGACCAAACATGGACGAGGTTGTCATAAATTTGGAGCAGCTTCAGGTTCCCCATATAAACGCAAACAATCAAAATCGTTCCCTTAATGGCTCTCGGCCTCGTAGAAAAAGTGCTGATGATGTTGTTGCCCATGCTAGATTCACCACAGCTTATCTACAACCTCTTACTCGACATTGCAATACTTAA 1293 0.4261 MGVCFSTQIKTESPFNTGLSSKYVSANKKDLNPCNEVYNDVISPSSEVSVPQTSKNEGEILESSNLKSFSLTELTAATRNFRSDSVLGGDFGSVFKGWIDDHSLSAAKPGTGIVVAVKRLNQESFRCHKEWLARHGMIHEASLEVPYLIHAEVNYLGQLSHPHLVKLIGYCFEDKNRLLVYEFMPRGSLENHLFMRGSYFQPLSWGLRLKVALGAAKGLAFLHRAETKMIYRDFKTSNVLLDSNYNAKLSDFGLAKDEPSGDNSHVSTKVMGTYGYAAPEYLATGHLTAKSDVFSFGVVLLEMLSGRRAIDKNRPKGQQNLVEWAKPYLANKHKLLRVLDNRLEGQYALDEAHKVATLSLQCLATESKLRPNMDEVVINLEQLQVPHINANNQNRSLNGSRPRRKSADDVVAHARFTTAYLQPLTRHCNT* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1480 430 ProSiteProfiles Protein kinase domain profile. 80 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1480 430 Gene3D Phosphorylase Kinase; domain 1 53 183 - -
Apr3g1480 430 PANTHER OS01G0588500 PROTEIN-RELATED 40 400 - -
Apr3g1480 430 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 40 400 - -
Apr3g1480 430 Pfam Protein tyrosine and serine/threonine kinase 88 379 IPR001245 GO:0004672|GO:0006468
Apr3g1480 430 Gene3D Transferase(Phosphotransferase) domain 1 184 405 - -
Apr3g1480 430 SUPERFAMILY Protein kinase-like (PK-like) 65 381 IPR011009 -
Apr3g1480 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1480 Apr-Chr3 29410362 29413997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1480 39 380 Glycoside Hydrolase AT3G07070 44.669 1.45e-93 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr3g1480 PK_Tyr_Ser-Thr 9.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1480 - - gmx:100809679 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1480 3 29410362 29413997 Apr3g1480 3 29410362 29413997 ECH
Apr2g2297 2 27953862 27956932 Apr3g1480 3 29410362 29413997 PCT