Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1476 ATGGCTTCTAACACCATGGCCATGGAAGAATGTGATCATAAGCTCCACGTGGCAGTTGGGAGGTCGTTGAAAAAAGCTGCAACTTTGCTTCAATGGTGTTTCACTCATTTTAGGAACACACACATTCACTTGCTTCATGTTTACCAACCTTCTACTATGATTCCCACTCTATTGGGAAAATTGCCAGCATCCCAAGCTAATCCTATAGTCGTGTCTGCTTATAGAATAGAGGAGAGAGAAGAGACCAAGAGGCTTTTGGAGAAGTACTTGAGCCTTTGTCGTGCAGCCAAGGTTAAGGCAAGTAGTGTCATGGGTGAAGCTGATCAAGTGCAGAAAGGGATTGTCGATTTGATGATTAGGCATGATATCAGGAAACTAGTTATTGGAGGAATACCGGAAAATTGCATGAAAGTCAAAAGGAAGTCCAGCAAAGCAAATTATGTTGCTAAAAATGCTCCCCCATTCTGTGAAATATGGTTTGTCTATAAAGGTAAACATATATGGACAAGAGAAGCTTCTGAAACTCCTCGGTCTTTGTCTTCATGTGCTCAACCCGAGACTGCAGAGAGCTTAAGAAGTAGATCTTTCCAATATGGTATGAATGAATTATTCGATTTAGAATGTCTTCAGTCAAATTCTGCAAGGACAACAACAAGTACAGTTCAGAGTGAAATCATTGAAAAAGAAGCTACTTTTTCTTCCAAATCATCCAGTTGTACTAGTCATTGTTCTCTCCAACATCTGGATGGGAGGTATTTAGATACTCATTCAGAGATTGAGGAAGAGACAATCAATAGTCAACTTATTGAAGCCGAAAGAGAAACTAATGCTGCCACAGACAATGCCTTAACAGAGCTGTTGAAGTGCAAAAGGTTGGAAGTCAAAGCCATTGAAGCCATAAGTAAGGTCAATTTGTTTGAGTCTGCCCATGCACATGAAGTAAAGCTCAGAAAAGAGGCTGAGGATGCACTGAGAGATACATTACATGAGCAGCAGAAGTTCTTGGATGAGAAAGAAGAAATTGCTACTGAGCTGCAAAGGACCATGAGAAGTATTTCCCTTCTAAGCAGTTGTGCACATGAAACCAACCGTAGGAGAGATGAAGCTGCAGATGAACTATCAATAATTCAAGCTTCCATCTCAAACTTATGGCATGAAAAACAGCAGATCAGCCGACAGAAAATGGAAGCACTACGCTGGCTTGAGCGGTGGAGAAGTCGTGGACATGTTGCAGCAGATCCCTGCAATGGGATCATTGGATTTGCTGAAGATTTCCCTGAGCTAGCAGAATTTTCATTAGCTGATCTTCAAAATGCCACATGCAATTTTTCTGAGAGCTTCAAGATTAGGGAGGGTGGGTATGGTTCTATTTATAAGGGGGAAATGTTGGGTAGAACTGTTGCTATAAGGAAGCTCCATCCACATAACATGCAAGGATCAGCAGAGTTTCATCAAGAGGTTCAAGTTCTTGGTAGTGTCCAGCATCCTCATCTGGTAACCTTGCTTGGTGTTTGTCCTGGAGCCTGGTCACTTGTGTATGAGTACTTGCCCAATGGAAGTCTCCAAGACTACCTATCAAGAAAAGGCAGTCTTCTCCCTTTGACATGGAATATCCGAGCACGATGGATTGCTGAAATTGCTACAACTCTATGCTTCTTACATTCTTCCAAACCTGAAACTATTATCCATGGTGATCTGAAGCTTGAAACTGTCCTTCTTGATTCAGCACTTAGTTGCAAGATATGTGAATTTGGGTTCAGCAGGGTGGTGAAAGAGGAGTCACTCTATCTACCTAGTTTTCGCTTCAGCAATGAGCCAAAGGGTTCCTTTACATATACAGATCCCGAGTTTCAGAGAACTGGAGTACTAACACCTAAGTCTGACATATACTCTTTTGGCCTCATCATTTTGCAACTCCTCACTGGTAGGACTCCAGTTGGACTTGCTGGTGAAGTACGCAAAGCAGTTTCATGTGGAAAATTATCTTCAATTTTGGACTCTTCAGCTGGAGAATGGAATTCCACTATGGTAACACAATTGGTTGAACTAGGATTGCAATGCTGCCAACCAAAGAGTAGAGACAGACCAGAGTTAACACCTTCTCTAGTGAAGGAATTGGAGCAGTTGCATGCTTTAGAAGAGCGACCAGTGCCATCATTTTTCTTGTGTCCAATCCTTCAGGAAATAATGTATGATCCTCAAGTTGCAGCAGACGGATTTACTTATGAAGCGAAGGCCATATGTGAATGGCTGGAAAATGGACGCAATACTTCTCCTATGACTAATTTAAAATTGAGTCACCTGCATCTCACTCCCAATCATGCACTTCGACTTGCTATCCAAGGCTGGCTTTGCAAATCTTGA 2364 0.4201 MASNTMAMEECDHKLHVAVGRSLKKAATLLQWCFTHFRNTHIHLLHVYQPSTMIPTLLGKLPASQANPIVVSAYRIEEREETKRLLEKYLSLCRAAKVKASSVMGEADQVQKGIVDLMIRHDIRKLVIGGIPENCMKVKRKSSKANYVAKNAPPFCEIWFVYKGKHIWTREASETPRSLSSCAQPETAESLRSRSFQYGMNELFDLECLQSNSARTTTSTVQSEIIEKEATFSSKSSSCTSHCSLQHLDGRYLDTHSEIEEETINSQLIEAERETNAATDNALTELLKCKRLEVKAIEAISKVNLFESAHAHEVKLRKEAEDALRDTLHEQQKFLDEKEEIATELQRTMRSISLLSSCAHETNRRRDEAADELSIIQASISNLWHEKQQISRQKMEALRWLERWRSRGHVAADPCNGIIGFAEDFPELAEFSLADLQNATCNFSESFKIREGGYGSIYKGEMLGRTVAIRKLHPHNMQGSAEFHQEVQVLGSVQHPHLVTLLGVCPGAWSLVYEYLPNGSLQDYLSRKGSLLPLTWNIRARWIAEIATTLCFLHSSKPETIIHGDLKLETVLLDSALSCKICEFGFSRVVKEESLYLPSFRFSNEPKGSFTYTDPEFQRTGVLTPKSDIYSFGLIILQLLTGRTPVGLAGEVRKAVSCGKLSSILDSSAGEWNSTMVTQLVELGLQCCQPKSRDRPELTPSLVKELEQLHALEERPVPSFFLCPILQEIMYDPQVAADGFTYEAKAICEWLENGRNTSPMTNLKLSHLHLTPNHALRLAIQGWLCKS* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1476 787 ProSiteProfiles Protein kinase domain profile. 443 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1476 787 Gene3D Phosphorylase Kinase; domain 1 421 515 - -
Apr3g1476 787 Pfam Protein tyrosine and serine/threonine kinase 448 699 IPR001245 GO:0004672|GO:0006468
Apr3g1476 787 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 717 787 IPR013083 -
Apr3g1476 787 ProSiteProfiles U-box domain profile. 716 787 IPR003613 GO:0004842|GO:0016567
Apr3g1476 787 PANTHER OS02G0152300 PROTEIN 9 786 - -
Apr3g1476 787 SMART Ubox_2 720 783 IPR003613 GO:0004842|GO:0016567
Apr3g1476 787 Gene3D Transferase(Phosphotransferase) domain 1 516 716 - -
Apr3g1476 787 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 29 153 - -
Apr3g1476 787 CDD RING-Ubox_WDSUB1_like 721 762 - -
Apr3g1476 787 CDD STK_N 14 164 - -
Apr3g1476 787 Pfam U-box domain 717 786 IPR003613 GO:0004842|GO:0016567
Apr3g1476 787 PANTHER OS10G0100500 PROTEIN 9 786 - -
Apr3g1476 787 Gene3D HUPs 13 162 IPR014729 -
Apr3g1476 787 SUPERFAMILY RING/U-box 712 786 - -
Apr3g1476 787 SUPERFAMILY Protein kinase-like (PK-like) 427 699 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1476 Apr-Chr3 29381602 29387145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1476 12 784 U-box Gene Family AT2G45910 35.812 3.93e-159 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Apr3g1476 PK_Tyr_Ser-Thr 6.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1476 - - gmx:100799032 1283.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1476 3 29381602 29387145 Apr3g1476 3 29381602 29387145 ECH
Apr2g2291 2 27923453 27927895 Apr3g1476 3 29381602 29387145 PCT