Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1472 ATGGAGGATGAGAAAGCGAGCGCGGTGATTGGGTTGGTGAATGAGATTGCTAGCATCTCAGATTACAGGCCTACGGTGAAGAAGCAGTACTGCAACTTGGCGCGTAGGTTGAAGCTGCTGATCCCGTTGTTCGAAGAGATTACGGACATGAAAGAGGCGATTCCTGAGGACACTTCCAAAGCCATGCTCGCCTTCAAGGAAGCTCTCGAATCCGCCACGGAACTCCTCAGATTCGGAAGTGAAGGAAGCAAGATTTACTTGGTCCTTGAGAGAGACAAAATTATGAATAAATTCAATGAGGTGACAACTCAGTTGGAACAGTCATTGGGTGCAATTTCCTTTGATCAACTTGACATATCAGATGAAGTTAAAGAGCAGGTTGAGCTGGTTCTTGCCCAGTTCAAAAGAGCTAAAGGGAGGGTTGATGAACCAGATGTCAAGTTGTATGAGGATATGCTGTCTCTTTACAACAACAGCAATGATGCAGCTATAGATCCATCTGTTCTAAGTCGATTAGCTGAAAAATTGCAATTGATGGGAATAGCTGATCTTACACAAGAATCACTTGCTTTGCATGAGATGGTGGCAGCAAGTGGTGGGGATCCAGGGGCACACATTGAGAAAATGTCGATGTTATTGAAGAAGATAAAGGATTATGTGCAAACTGAAAATCTAGACAAGGATGATAATTTAGAAGGAAAAGGCATTTCGTCAAGAGTCAGTGGACTAGGAACAAATGAAAAGAGTCATCAGGCTCCTGTTATTCCTGATGATTTTCGATGTCCAATTTCCCTAGAATTAATGAAGGATCCTGTCATTGTTTCAACTGGACAGACTTATGAGCGTGCTTGTATTGAGAAGTGGTTGCAAGCAGGGCATGGAACATGCCCAAAAACACAACAACCTCTCACTAGTACTGTTCTCACACCCAACTATGTCTTACGAAGCCTCATAGCACAATGGTGTGAAGCTAATGGCATAGAGCCACCAAAACGACCCAGCAGTTCACAACCTAGTAAATCAGCATCAGCCTGCTCCCCAGCTGAGCGAAGTAAGATTGGAAATCTTCTCCAAAAGCTCACATCTGGCAGTCCTGAAGAGCAGAGATTAGCTGCAGGTGAAATCCGCCTTCTTGCGAAACGCAATGCAGATAACCGTGTGGCCATTGCTGAAGCTGGTGCAATACCTCTCCTTGTCCGTCTCCTGTCTGTGCCTGACTCCCGCACTCAAGAGCATGCTGTGACCGCCCTTCTGAATCTTTCCATACATGAAAATAACAAAGGAAGCATTGTTTCCTCAGGAGCAGTTCCAGGTATAGTTCAAGTGCTGCATAAGGGAAGCATGGAAGCTCGGGAAAATGCAGCAGCAACACTTTTCAGTCTTTCAGTTATAGATGAAAATAAGGTTACAATTGGGGCTTCAGGAGCCATACCACCGCTAGTGATACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATTTACCAGGGTAATAAGGGAAAGGCAGTGAGGGCTGGTGTTATTCCCACACTGATGCGGCTGCTGACTGAACCTAATGGGGGAATGGTGGATGAAGCATTGGCTATTTTGGCAATATTGGCTAGTCATCCTGAAGGGAAGGCTACCATTGGAGCTGCAGAGGCAGTACCAGTTTTGGTCGAGTTTATTGGGAATGGATCCCCAAGGAACAAAGAGAATGCAGCTGCTGTTTTAGTTCACCTCTGTTCTGGAGATCAACAATATCTAGCACAGGCCCAAGAGCTAGGGGTGATGGTCCCACTGTTGGAATTGGCTCAAAATGGTACAGACAGAGGGAAAAGGAAGGCTGCACTATTGCTAGAGCGTATGAGCAGGTTTCTTGAGCAGCAGCAGGAAGTTCCAACACAAACTGAAAGTCAATCTCAGAACGAGGATGTCCAACCACCTTCAATTGCTAACATCGATGATTCCTGA 1983 0.4564 MEDEKASAVIGLVNEIASISDYRPTVKKQYCNLARRLKLLIPLFEEITDMKEAIPEDTSKAMLAFKEALESATELLRFGSEGSKIYLVLERDKIMNKFNEVTTQLEQSLGAISFDQLDISDEVKEQVELVLAQFKRAKGRVDEPDVKLYEDMLSLYNNSNDAAIDPSVLSRLAEKLQLMGIADLTQESLALHEMVAASGGDPGAHIEKMSMLLKKIKDYVQTENLDKDDNLEGKGISSRVSGLGTNEKSHQAPVIPDDFRCPISLELMKDPVIVSTGQTYERACIEKWLQAGHGTCPKTQQPLTSTVLTPNYVLRSLIAQWCEANGIEPPKRPSSSQPSKSASACSPAERSKIGNLLQKLTSGSPEEQRLAAGEIRLLAKRNADNRVAIAEAGAIPLLVRLLSVPDSRTQEHAVTALLNLSIHENNKGSIVSSGAVPGIVQVLHKGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVILLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPNGGMVDEALAILAILASHPEGKATIGAAEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQELGVMVPLLELAQNGTDRGKRKAALLLERMSRFLEQQQEVPTQTESQSQNEDVQPPSIANIDDS* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1472 660 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Apr3g1472 660 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Apr3g1472 660 MobiDBLite consensus disorder prediction 632 653 - -
Apr3g1472 660 Pfam Neurochondrin 516 643 IPR008709 -
Apr3g1472 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515
Apr3g1472 660 MobiDBLite consensus disorder prediction 632 660 - -
Apr3g1472 660 PANTHER U BOX DOMAIN-CONTAINING 6 643 - -
Apr3g1472 660 SUPERFAMILY RING/U-box 245 331 - -
Apr3g1472 660 CDD RING-Ubox_PUB 259 301 IPR045210 -
Apr3g1472 660 Gene3D - 339 648 IPR011989 -
Apr3g1472 660 SUPERFAMILY ARM repeat 354 634 IPR016024 -
Apr3g1472 660 Gene3D - 4 116 IPR036537 GO:0007166
Apr3g1472 660 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Apr3g1472 660 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515
Apr3g1472 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Apr3g1472 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
Apr3g1472 660 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 643 - -
Apr3g1472 660 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Apr3g1472 660 SMART arm_5 382 422 IPR000225 GO:0005515
Apr3g1472 660 SMART arm_5 505 545 IPR000225 GO:0005515
Apr3g1472 660 SMART arm_5 546 586 IPR000225 GO:0005515
Apr3g1472 660 SMART arm_5 464 504 IPR000225 GO:0005515
Apr3g1472 660 SMART arm_5 423 463 IPR000225 GO:0005515
Apr3g1472 660 SMART arm_5 588 628 IPR000225 GO:0005515
Apr3g1472 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1472 Apr-Chr3 29328799 29333383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1472 1 648 U-box Gene Family AT3G46510 70.287 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1472 - - gmx:100812160 1102.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1472 3 29328799 29333383 Apr3g1472 3 29328799 29333383 ECH
Apr10g2291 10 35000182 35005137 Apr3g1472 3 29328799 29333383 PCT