Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1469 ATGGAGGGTGGGAATAATGAGGGAGTGCAGACGGGAGTGGGAATGGGAGGGTCTAATGGGGCTGGAGCGAGTTCAAGGTGGAACCCTACAAAAGAGCAAATAAGCATGCTAGAGAATCTGTATAAGCAGGGAATAAAGACACCAAGTGCTGAGGAAATTCAGCAGATAACTGCTAGGCTCAGGGTGTATGGTCACATCGAAGGAAAGAATGTCTTCTACTGGTTTCAGAATCACAAAGCCAGGCAGAGACAGAAGCAGAAGCAAGAAACAATTGCTTATTACAACCGCTATCTTCATAGGCCCCAGCCCTTCTTTTCTCCCCCAAATGCCATCTGTGCTCCATGCTGCATTCCTCAGCCACAGGGAGAAATTGGGTTTTATCCCCAACATCCAAAGATGCTTGTACCAGTAGGTTTTCGAAGGAACCCAGCAGAGAAAGTTGTGCCCGCAGGCATGCCAAGCATCTGTAATGGCCCAATGGTATATGGAGGCATGCAACAGAAAATCCCGGATTGTAACTTCAGCTACAGTAACCAAGAAACGTTGGATCTCTTTCCTCTGCACCCAACTGGCATTTTGGAAGGAAAAACCACAGATCAGGTGTCATCTCTGGCTTCAGTTTCTCCTGATAGTTCAACTGATACACCTTCCGGTTCTTCTGATATCAATGAAGAGGATGCTTGCCCAGGAAACCAGCCCTTCTTTGATTTTTTTACTACTTCAGGACAAGGTTCTTAA 738 0.4648 MEGGNNEGVQTGVGMGGSNGAGASSRWNPTKEQISMLENLYKQGIKTPSAEEIQQITARLRVYGHIEGKNVFYWFQNHKARQRQKQKQETIAYYNRYLHRPQPFFSPPNAICAPCCIPQPQGEIGFYPQHPKMLVPVGFRRNPAEKVVPAGMPSICNGPMVYGGMQQKIPDCNFSYSNQETLDLFPLHPTGILEGKTTDQVSSLASVSPDSSTDTPSGSSDINEEDACPGNQPFFDFFTTSGQGS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1469 245 CDD homeodomain 26 86 IPR001356 GO:0003677
Apr3g1469 245 MobiDBLite consensus disorder prediction 199 226 - -
Apr3g1469 245 Pfam Homeodomain 24 84 IPR001356 GO:0003677
Apr3g1469 245 ProSiteProfiles 'Homeobox' domain profile. 20 85 IPR001356 GO:0003677
Apr3g1469 245 MobiDBLite consensus disorder prediction 1 27 - -
Apr3g1469 245 Gene3D - 24 92 - -
Apr3g1469 245 SMART HOX_1 22 89 IPR001356 GO:0003677
Apr3g1469 245 MobiDBLite consensus disorder prediction 11 27 - -
Apr3g1469 245 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 14 243 IPR044555 GO:0003700|GO:0099402
Apr3g1469 245 SUPERFAMILY Homeodomain-like 22 92 IPR009057 -
Apr3g1469 245 MobiDBLite consensus disorder prediction 199 245 - -
Apr3g1469 245 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 14 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1469 Apr-Chr3 29295842 29296955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1469 20 239 Wox Gene Family AT5G59340 42.063 1.17e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Apr3g1469 Homeodomain 5.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1469 - - pvu:PHAVU_011G064900g 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1469 3 29295842 29296955 Apr3g1469 3 29295842 29296955 ECH