Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1458 ATGTCAGCAGCTCTGGATATGACGCTCGACGATATCATCAAAAACAACAAAAAATCCGCGCCCGCACATTTCCGCGGCCGCGCCCGACCCTCCGGATCCGGACCTTCTCGTCGTTTCAACAACCGTGCCGCCAACCGCGCCGCACCCTATTCCACTGCCAAGGCGCCGGAGACGGCGTGGCAGCACGATTTTTATGCAGGTCAACATGCGGCTGTGGCGGGGTACCCTGCTCAAGGGGGTCGTGCCTCTTCCATAGAAACTGGAACCAAGCTCTACATTTCAAATTTGGATTATGGTGTTTCCAACGATGATATTAAGGAATTGTTTTATGAAGTTGGGGACCTGAAGCGGCATGGGGTTCATTATGACAGAAGTGGTAGATCGAAGGGTTCGGCAGAAGTAGTCTTTTCTCGACAAGCTGATGCTATAGCTGCTGTAACGAGATATAACAATGTTCAATTAGATGGGAAACCAATGAAGATAGCGATCGTGGGAACAAACATTTCTACACCTGGTGTGGCTCCTCCTGCAAATGGAGCTGTTGGAAATTCAAATGGGTTTCCTCGAAGTGGACAAGGAAGAGGTGGGGCATTCAGAAGGCCAGGAGGAAGAGGGCAAGGCATTCGAAGGGAACGAGGACGTGGAAGAGGTCGTGGTGAAAAGTTATCTGCAGATGATCTTGATGCTGATTTGGAGAAGTATCATGCAGAGGCAATGGAATTGAACTGA 729 0.5007 MSAALDMTLDDIIKNNKKSAPAHFRGRARPSGSGPSRRFNNRAANRAAPYSTAKAPETAWQHDFYAGQHAAVAGYPAQGGRASSIETGTKLYISNLDYGVSNDDIKELFYEVGDLKRHGVHYDRSGRSKGSAEVVFSRQADAIAAVTRYNNVQLDGKPMKIAIVGTNISTPGVAPPANGAVGNSNGFPRSGQGRGGAFRRPGGRGQGIRRERGRGRGRGEKLSADDLDADLEKYHAEAMELN* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1458 242 SUPERFAMILY RNA-binding domain, RBD 82 196 IPR035979 GO:0003676
Apr3g1458 242 MobiDBLite consensus disorder prediction 204 224 - -
Apr3g1458 242 Gene3D - 76 224 IPR012677 -
Apr3g1458 242 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 241 - -
Apr3g1458 242 MobiDBLite consensus disorder prediction 183 224 - -
Apr3g1458 242 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 241 - -
Apr3g1458 242 MobiDBLite consensus disorder prediction 16 52 - -
Apr3g1458 242 SMART FoP_duplication_2 169 242 IPR025715 -
Apr3g1458 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Apr3g1458 242 SMART rrm1_1 90 162 IPR000504 GO:0003723
Apr3g1458 242 Pfam C-terminal duplication domain of Friend of PRMT1 191 236 IPR025715 -
Apr3g1458 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Apr3g1458 242 CDD RRM_THOC4 89 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1458 Apr-Chr3 29222286 29226435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1458 88 163 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 8.61e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1458 K12881 - gmx:100775827 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1458 3 29222286 29226435 Apr3g1458 3 29222286 29226435 ECH
Apr2g2277 2 27822391 27826247 Apr3g1458 3 29222286 29226435 ECH
Apr2g2277 2 27822391 27826247 Apr3g1458 3 29222286 29226435 PCT