Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1457 ATGCGCATAACCAACGTAATAGCGGGCAACGCTCTTCTTTTCCGGAGTTCACCCTTGGCACGATTTCTATGCCAGCGCCATCATTCGTCTACCAATTTGTTTGTCGCAGGGCTTTCCTACGACACGAATGAACCTGTTTTGAGAGATGCGTTTGGACAACATGGTGAAATCATTGAAGTTAAAGTAATATGTGATCACGTGACTGGACAATCAAGAGGGTATGGATTCGTGCGGTTCGCTTCTGAAATTTCAGCCGCCACAGCTCGCAAAGAAATGGATGGCCAGATAGTGGATGGCAGACCCATTCGGGTGAGTTATGCGCACAAAGGGTAG 333 0.4775 MRITNVIAGNALLFRSSPLARFLCQRHHSSTNLFVAGLSYDTNEPVLRDAFGQHGEIIEVKVICDHVTGQSRGYGFVRFASEISAATARKEMDGQIVDGRPIRVSYAHKG* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1457 110 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Apr3g1457 110 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 8 109 - -
Apr3g1457 110 Gene3D - 16 110 IPR012677 -
Apr3g1457 110 SMART rrm1_1 32 105 IPR000504 GO:0003723
Apr3g1457 110 SUPERFAMILY RNA-binding domain, RBD 27 109 IPR035979 GO:0003676
Apr3g1457 110 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Apr3g1457 110 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 8 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1457 Apr-Chr3 29212710 29214648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1457 22 109 Eukaryotic Initiation Factors Gene Family AT3G16380 38.636 2.00e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1457 K13195 - gmx:100306540 170.244