Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1453 ATGAAGAGAGGCAGAGACATAGACATGGCTAATTGTTTGATGTTACTGCCCAAAGTTGGTGAAAATTGCACCAACCCATCAAGGGATAGAGTTTTAAAGGGTGGTGCCTTTCAGTGCAAGACTTGTAACAGGCAATTCCTTTCATTTCAAGCCCTTGGGGGCCACCGAGCCAGCCACAAGAAGCTAAAACTCATGGCTTCAAACCTTTCGTGTTCGACTATGAAACCAAAGGTGCACCAATGCCCGATTTGTGGGCTTGAGTTTGAAATTGGACAAGCGTTGGGAGGGCATATGAGAAAGCATAGAGCTGCAATAAATAATGGGTTTACAAACCATGATCATGCTGTGCCCAAATCTAATGCCACCAAAAGGTTTCGTTTGTGCTTGGACTTGAACTTGACACCTTATGAAAATGATCAGAACCTCAACTTAAGGACACCTGCGTTAAATTTCTTCATTTGA 462 0.4329 MKRGRDIDMANCLMLLPKVGENCTNPSRDRVLKGGAFQCKTCNRQFLSFQALGGHRASHKKLKLMASNLSCSTMKPKVHQCPICGLEFEIGQALGGHMRKHRAAINNGFTNHDHAVPKSNATKRFRLCLDLNLTPYENDQNLNLRTPALNFFI* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1453 153 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Apr3g1453 153 PANTHER ZINC FINGER PROTEIN ZAT5 6 145 - -
Apr3g1453 153 SMART c2h2final6 37 59 IPR013087 -
Apr3g1453 153 SMART c2h2final6 79 101 IPR013087 -
Apr3g1453 153 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Apr3g1453 153 Gene3D Classic Zinc Finger 35 101 - -
Apr3g1453 153 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Apr3g1453 153 PANTHER CYS2-HIS2 ZINC FINGER TRANSCRIPTION FACTOR 6 145 - -
Apr3g1453 153 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Apr3g1453 153 SUPERFAMILY beta-beta-alpha zinc fingers 37 101 IPR036236 -
Apr3g1453 153 Pfam C2H2-type zinc finger 78 103 - -
Apr3g1453 153 Pfam C2H2-type zinc finger 36 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1453 Apr-Chr3 29191998 29192633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1453 1 139 C2H2 Transcription Factor Family AT2G28710 47.712 3.00e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr3g1453 zf-C2H2_6 4.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1453 - - gmx:112998408 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1453 3 29191998 29192633 Apr3g1453 3 29191998 29192633 ECH
Apr2g2272 2 27796071 27797445 Apr3g1453 3 29191998 29192633 ECH
Apr2g2272 2 27796071 27797445 Apr3g1453 3 29191998 29192633 PCT