Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1451 ATGGTTCAACAAGAAATCCGAAAGGGTCCATGGACAGAACAAGAGGACTTCAAATTGGTCTATTTTGTTTCCTTATTTGGAGACCGTAGATGGGACTATTTAGCAAAGGTTTCAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTACGGTGGGTTAATTACCTGCACCCTGATCTCAAACGAGGGAAGCTGACACCCCAAGAAGAGCACCTCGTGATGGAGCTTCACTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGTAAACTACCAGGGCGAACGGATAATGAAATTAAGAATTTTTGGAGGACCCACTTGAGGAAAAAGAAGGCTCAAGAGAAAAAGCGAGGAGAAACTGCATCACCTGCATCTTCTAGTTGTCAATCTTTACTGTCCTCAAACAATCATGTTGTGGATTATTCACATGCTTCCAAAAAAGCTGGAGAAGAAAGCTTTTATGACACTGGTGGAGTAGATGGTGAAAAGGGGTACTGCTACTCTATGGATGATATATGGAAAGATATTGCTGAGTCAGAAGAGAACATTAATCTTCAACCTCTAACACCTTCTCCAACATGGGCACATGCTATGGGTGATGGATGA 603 0.4229 MVQQEIRKGPWTEQEDFKLVYFVSLFGDRRWDYLAKVSGLNRTGKSCRLRWVNYLHPDLKRGKLTPQEEHLVMELHSKWGNRWSRIARKLPGRTDNEIKNFWRTHLRKKKAQEKKRGETASPASSSCQSLLSSNNHVVDYSHASKKAGEESFYDTGGVDGEKGYCYSMDDIWKDIAESEENINLQPLTPSPTWAHAMGDG* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1451 200 CDD SANT 65 106 IPR001005 -
Apr3g1451 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Apr3g1451 200 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Apr3g1451 200 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Apr3g1451 200 SMART sant 7 57 IPR001005 -
Apr3g1451 200 SMART sant 60 108 IPR001005 -
Apr3g1451 200 MobiDBLite consensus disorder prediction 108 130 - -
Apr3g1451 200 Gene3D - 8 60 - -
Apr3g1451 200 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 3 187 - -
Apr3g1451 200 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Apr3g1451 200 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Apr3g1451 200 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 187 IPR044676 GO:0003700|GO:0006355|GO:0043565
Apr3g1451 200 CDD SANT 10 55 IPR001005 -
Apr3g1451 200 Gene3D - 64 107 - -
Apr3g1451 200 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Apr3g1451 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1451 Apr-Chr3 29176864 29178145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1451 1 197 MYB Transcription Factor Family AT5G59780 58.685 9.44e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr3g1451 Myb_DNA-binding 7.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1451 K09422 - gmx:100776886 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1451 3 29176864 29178145 Apr3g1451 3 29176864 29178145 ECH
Apr3g1451 3 29176864 29178145 Apr2g2269 2 27765229 27766230 PCT