Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1449 ATGCCGATTTCTAGAATTGCCATTGGAAATCCATCAGAGTTGGGGCAAGCTGAAGCGCTTAAGGCTGCTCTGGCTGAGTTCATCTCAATGCTCATCTTTGTCTTTGCAGGGGAAGGCTGTGGCATGGCATATAACAAGCTCACAAACAATGGTTCAGCAACAGCAGCTGGGGTGGTGGCAGCATCACTTTCTCATGCCTTTGCTCTTTTTGTTGCGGTCTCTATTGGTGCTAACATATCGGGTGGGCATGTTAATCCTGCTGTCACATTTGGTGCCTTTATTGGTGGCCACATTTCCCTCCTTAGAGGCATTTTGTATTGGATTGCTCAGTTGCTTGGCTCTGTCGTTGCTTGCTTGCTCCTTAAATTTGCCACTGGTGGACTGGAAACGACTGCGTTCTCATTGTCTTCAGGGGTGGGACCAGCAAATGCATTAGTCTTTGAAATTGTGATGACTTTTGGTTTGGTTTACACAGTGTATGCCACTGCAGTGGATCCAAAGAAGGGTAACCTTGGCATAATTGCTCCAATTGCAATTGGTTTTATTGTGGGTGCAAACATCTTGGCAGGTGGTGCCTTTGATGGGGCTTCCATGAACCCAGCAGTTTCTTTTGGACCTGCTGTTGTTAGCGGGAAATGGGCTAATCATTGGGTATACTGGGCCGGCCCATTAATTGGTTCTGCTATTGCTGCGGTTGTCTATGAGATTTTCTTCATCGCCCCAAATTCTTATGAACAGATACCTGTCACAGATTATTAG 759 0.4638 MPISRIAIGNPSELGQAEALKAALAEFISMLIFVFAGEGCGMAYNKLTNNGSATAAGVVAASLSHAFALFVAVSIGANISGGHVNPAVTFGAFIGGHISLLRGILYWIAQLLGSVVACLLLKFATGGLETTAFSLSSGVGPANALVFEIVMTFGLVYTVYATAVDPKKGNLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSGKWANHWVYWAGPLIGSAIAAVVYEIFFIAPNSYEQIPVTDY* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1449 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g1449 252 CDD MIP 27 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g1449 252 PANTHER AQUAPORIN-8 1 252 IPR034294 -
Apr3g1449 252 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 252 - -
Apr3g1449 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Apr3g1449 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Apr3g1449 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g1449 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g1449 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g1449 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g1449 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g1449 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g1449 252 SUPERFAMILY Aquaporin-like 19 243 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1449 Apr-Chr3 29170855 29172522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1449 1 252 Major Intrinsic Protein MIP AT4G01470 76.587 2.55e-137 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1449 K09873 - gmx:100777419 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1449 3 29170855 29172522 Apr3g1449 3 29170855 29172522 ECH
Apr2g2268 2 27761973 27763325 Apr3g1449 3 29170855 29172522 ECH
Apr2g2268 2 27761973 27763325 Apr3g1449 3 29170855 29172522 PCT