Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1446 ATGTCTTCTAATTCTACGGAACTTAACAGCTCTTCGGAATGGAAGCTTGAAGAAATTGTTTCAATCATTTTAGTGTGCATTATCTTTTTTGCACTGAGTGGTTGCTGCGGCATATTTAACCGTCTCTTTTGTGGACTTTGTCGTGCGTGCAACACTAGAAACCAGGTTCCAAGACGGGTTCTAAATGAGTTCATTCCCAATGATCCTTCTATGCAGCTTCAAAGCCGTGGATTGGATTTCTCTGTGGTGAAGTCTCTTCCCATGTCTCAGTTTGAGAAAAACGAGGGAGAACACAAGAGAACTAACGTGGACTGTGCCATTTGCTTGGGAGAGTTTGAGGAAGGGGAATGGCTTAAACATCTTCCAAATTGTAGCCACAGTTTCCATGTTTCATGCATTGACACGTGGTTTCAGTCTCATTCAAATTGTCCTCTGTGCAGATCCTTTGTGCATGATCATCACCTCATAGAGTGTTCTGTATCTTCTCACACATTCCTTGAGACTTCGAGGAGGGAAGACTTCTTTCAAGAGAGGGTTGATCATTATCAATCCATTTTCTCTGAAAATCATGCTATTAGAGAACAACAGTCCAATCCCGGTTGA 603 0.4212 MSSNSTELNSSSEWKLEEIVSIILVCIIFFALSGCCGIFNRLFCGLCRACNTRNQVPRRVLNEFIPNDPSMQLQSRGLDFSVVKSLPMSQFEKNEGEHKRTNVDCAICLGEFEEGEWLKHLPNCSHSFHVSCIDTWFQSHSNCPLCRSFVHDHHLIECSVSSHTFLETSRREDFFQERVDHYQSIFSENHAIREQQSNPG* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1446 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 152 IPR013083 -
Apr3g1446 200 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 157 - -
Apr3g1446 200 SUPERFAMILY RING/U-box 104 152 - -
Apr3g1446 200 Pfam Ring finger domain 104 147 IPR001841 -
Apr3g1446 200 SMART ring_2 105 146 IPR001841 -
Apr3g1446 200 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 18 157 IPR044675 -
Apr3g1446 200 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1446 Apr-Chr3 29147577 29148179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1446 64 163 Rapid Response to Elicitors AT3G16720 48.077 1.20e-25 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1446 - - aprc:113859782 422.55