Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1423 ATGTATACGCCCCGTAACACCTCATTCTCACGCGCCGCCGATTCCCTCGCTCATTTCGATGCATCACCAATGCAGTACTCCACCACTCCTCATCCTCCTCCTCAGCATCATCACTGCCCTCAACTCGCCCTCGCCGAGTTAGACTCGCTGCACGACTCTCTCTCCCAACTCAACTCGGAGGTGAGTTCGAATACCAGCAGCGGGTGTACCAGCTACGTTGGATCACCGAGTTCGCTGGTGAGTTACGAGACTCGACGAGCGTGCTTGATGCAGAGGAGCGTTAGTAGCCATTCTCTGCAGAAGAATAATGGGACCCACCACCCCTTTTCTCCTCTCTTTGCCGAGTTGCTGGACTCGGAGAACGGTCCAGTACGGAGAGTTTGCAGTACCGGTGATTTACAGAGATTCAATGGGATGCAACATTATCATCAGTCTGATAGCCCGTTGTCAAGCGAAAGTAGTATGATCATAGAAGGAATGAGCAGAACTAGTCCTTATAGCCCAGAAGAGAAGAAGGTGAGGATTGAGAGATATAGAAGCAAGAGAAACCAGAGGAACTTCAGCAAGAAAATTAAGTATGCTTGCAGGAAGACATTGGCAGACAGCAGGCCACGTATCAGAGGAAGATTTGCTAGGAATGATGAAATTGTAATGAACCCTCCAGTTCAGTGGAGCCATATCAGCACTGGAGAGGAAGAGGATGAAGAAGAAGAGAATTGGGTCAACTTCTTTGATACATTAGTTCCTTCAAATCTTGCTCAGGAGCCTCAAGGCAGTTCCTCCTTTGGTGTGTTTTATTAA 801 0.4856 MYTPRNTSFSRAADSLAHFDASPMQYSTTPHPPPQHHHCPQLALAELDSLHDSLSQLNSEVSSNTSSGCTSYVGSPSSLVSYETRRACLMQRSVSSHSLQKNNGTHHPFSPLFAELLDSENGPVRRVCSTGDLQRFNGMQHYHQSDSPLSSESSMIIEGMSRTSPYSPEEKKVRIERYRSKRNQRNFSKKIKYACRKTLADSRPRIRGRFARNDEIVMNPPVQWSHISTGEEEDEEEENWVNFFDTLVPSNLAQEPQGSSSFGVFY* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1423 266 Pfam CCT motif 173 213 IPR010402 GO:0005515
Apr3g1423 266 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 34 266 IPR045281 GO:0009909
Apr3g1423 266 MobiDBLite consensus disorder prediction 56 76 - -
Apr3g1423 266 ProSiteProfiles CCT domain profile. 171 213 IPR010402 GO:0005515
Apr3g1423 266 PANTHER CCT MOTIF PROTEIN 34 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1423 Apr-Chr3 28828736 28831188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1423 159 212 C2C2-CO-like Transcription Factor Family AT5G24930 50.000 1.01e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr3g1423 CCT 1e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1423 - - gmx:102667610 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1423 3 28828736 28831188 Apr3g1423 3 28828736 28831188 ECH
Apr2g2250 2 27633470 27635405 Apr3g1423 3 28828736 28831188 PCT