Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1419 ATGAATGAACAGAAAGTGAGGGAAATGGAGGCATTTTCAAGAGACCAACGTGGCTCGCTCGAAGTGTTTAACCCTTCTTCTTCTTACTCCACCGAGAAACCCGTGAACTCGCCCTTACGCTCCCAATCCACGTGGAAGAATTGGATAGACTCACGCGCCACCGAGGCTCCGGAGCAGCGCAATACCGATGAAGTCGCCGCTGCCACTGCCGCCACTTCGTGGATGGCACTCAAGGAGCCAACTCCTCCGCCGCCGACGCTCGCTGCCATCCTCGGCGAGTCTCGCCCGGCAACCGGAGAGGTTGGTGCGGCGGCGCAGAGGGCGGCGGAGTGGGGGTTAGTGCTGAAGACGGACACGGAGACGGGGAAGCCGCAGGGAGTAGCGGTTCGGAACTCCGGCGGCGAGGAACCAAACGCGAGAGCTAGTGGCGGTTCGAGGAGGGATTCGAACAACTCTGTGAGAAGCTCCGGCGAGTCTTCCGATGACGGAAGAGAGTACCGGGGAATTCCGAGGGTTTCGGAGGATCTGAGAGACGCTTTATCGACGTTTCAACAGACTTTCGTGGTTTCGGATGCTACCAAACCCGATTACCCGATTTTGTATGCGAGTGCCGGGTTTTTTAAGATGACGGGTTATACATCCAAGGAGGTCATTGGAAGGAACTGTCGGTTTTTACAGGGAGCAGAAACGGATCCGGATGACGTGGCAAAGATAAGGGAATCACTGCAAACTGGGTCTACTTATTGTGGAAGGTTACTGAATTACAAGAAAGATGGTACTCCCTTTTGGAACCTTCTTACTATTGCTCCTATTAAGGGTGATGATGGCAGAATTCTCAAGTTTATTGGAATGCAAGTGGAAGTTAGCAAGCACACAGAGGGGTCCAAGGAGAAGATGCTACGTCCCAATGGATTGCCCGAATCCTTGATTCGATATGATGCTCGTCAGAAAGAGAAAGCAAATAGTTCAGTATTTGAGTTGGTGCATGCGGTGAGGCGACCCCGGGCACTGAGTGAATCAGCAAACCGTCCCACGATCAAGAAGCCAGCATCTAGTGATGATGCACAAGTCAAAACACAAAACTCTTCAAGGAGAAAATCCGAGAGTGTTACTTCATTTAGAAGAAAATCACATGCAGGAGATTACAAAAGTTCAATGCAAAGAATCACTGAGCAACCTGAAAATGAAAAGAAACACAAAAACTCTCGTCGCCGTTCTTTCATGGGGTTCATCAGGAAAAGTCAGTCCAGCTATGAAAGCTTCAATGACGAAGCTGGTGCTGAGGACAGCTCTGAGAGTAGTGATGAGGATGATGAAAGGCCTGAGAGTTTTGATGGAAAATTACAGAAGAAGGAAAAGAGAAAGGGTCTTGATCTTGCTACCACACTCGAACGTATTGAGAAGAATTTTGTCATTACTGATCCTAGGCTACCTGACAACCCAATTATCTTTGCATCTGATAGCTTCTTAGAGCTTACTGAGTATAGTCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCAGCAACCGTGAGAAAAATTAGAGAAGCTATTGACAATCAAAGAGAAGTTACCGTGCAGCTCATTAATTATACAAAGAGTGGTAAAAAGTTCTGGAATTTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAGGTACAGTATTTCATTGGAGTTCAACTTGATGGTAGTCAACACGTGGAGCCTCTTCACAACCGCATTGCTGATGATACTGCAAAGGAGGGAGAACAATTGGTGAAAAAAACTGCTGAAAATGTTGATGATGCAGTGAGAGAACTTCCAGATGCTAATTTGAAACCAGAAGATTTATGGAAAAATCATTCAAAAGTGGTTCACCCCAAACCCCACAGGAAGGATGAAGCCGCCTGGAAAGCTATTCAGACGATCCTAGATAGTGGAGAAGAGATAGGCTTGAAGCATTTTAGGCCAATTAAACCTCTGGGATCAGGAGATACTGGCAGTGTCTATCTGGTGGAGCTAGGCGAAACTGGTCAATATTTTGCCATGAAAGCTATGGAGAAGGGTGTTATGCTCAATCGTAATAAGGTGCATAGAGCTTGCACAGAGAGAGAGATCCTCGACATGTTGGACCACCCTTTTCTTCCTGCATTATATGCTTCCTTTCAGACCAATACACATATCTGTTTGATAACTGATTATTGTCCTGGTGGAGAACTATTCCTGCTTCTTGATCGACAACCAGCTAAGGTTCTGAGGGAAGATGCAGTAAGATTTTATGCTGCTGAAGTAGTTGTTGCCTTGGAGTACCTTCATTGTCAAGGGATAATATATCGAGATTTGAAGCCAGAAAATGTGTTACTCCAAAGCAGTGGACACGTGTCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAACCACAGCTTCTAGTTCCAGTAATAAATGAAAAGAAGAAACCACCGAAATTCCAACAGGCTCCAATATTTATGGCTGAACCTATGAGAGCATCAAATTCTTTTGTGGGCACAGAAGAGTACATAGCTCCGGAAATTATAACGGGTTCAGGCCATACAAGTGCTGTGGATTGGTGGGCTCTTGGAATTCTTCTATATGAAATGTTTTATGGGTATACACCATTCAGGGGAAAGACAAGGCAAAGAACATTTACAAATATTCTCCACAAGGACCTTAAATTTCCCAAAAGTAAACAGGTAAGTTTCAGCGCAAAGCAATTAATGTACCGATTGTTGAATAGAGACCCCAAAAGCAGATTGGGATCAAGAGAAGGAGCAAATGAAATTAAGCATCACCCTTTCTTTCGGGGTGTCAATTGGGCCCTAGTTCGTTGCACGAAACCTCCTGAGCTTGATGCTCCTCTCTTTGGGACAACTGAAGAAGAAAAAGAAGCAAAACCTGATGATCATGTGGAAGAGGAGATGAGCGTCTTCTAA 2961 0.4542 MNEQKVREMEAFSRDQRGSLEVFNPSSSYSTEKPVNSPLRSQSTWKNWIDSRATEAPEQRNTDEVAAATAATSWMALKEPTPPPPTLAAILGESRPATGEVGAAAQRAAEWGLVLKTDTETGKPQGVAVRNSGGEEPNARASGGSRRDSNNSVRSSGESSDDGREYRGIPRVSEDLRDALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGAETDPDDVAKIRESLQTGSTYCGRLLNYKKDGTPFWNLLTIAPIKGDDGRILKFIGMQVEVSKHTEGSKEKMLRPNGLPESLIRYDARQKEKANSSVFELVHAVRRPRALSESANRPTIKKPASSDDAQVKTQNSSRRKSESVTSFRRKSHAGDYKSSMQRITEQPENEKKHKNSRRRSFMGFIRKSQSSYESFNDEAGAEDSSESSDEDDERPESFDGKLQKKEKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQREVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNRIADDTAKEGEQLVKKTAENVDDAVRELPDANLKPEDLWKNHSKVVHPKPHRKDEAAWKAIQTILDSGEEIGLKHFRPIKPLGSGDTGSVYLVELGETGQYFAMKAMEKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTNTHICLITDYCPGGELFLLLDRQPAKVLREDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSSGHVSLTDFDLSCLTSCKPQLLVPVINEKKKPPKFQQAPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMFYGYTPFRGKTRQRTFTNILHKDLKFPKSKQVSFSAKQLMYRLLNRDPKSRLGSREGANEIKHHPFFRGVNWALVRCTKPPELDAPLFGTTEEEKEAKPDDHVEEEMSVF* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1419 986 MobiDBLite consensus disorder prediction 1 42 - -
Apr3g1419 986 MobiDBLite consensus disorder prediction 344 367 - -
Apr3g1419 986 MobiDBLite consensus disorder prediction 964 986 - -
Apr3g1419 986 ProSitePatterns Protein kinases ATP-binding region signature. 662 685 IPR017441 GO:0005524
Apr3g1419 986 Gene3D Transferase(Phosphotransferase) domain 1 740 954 - -
Apr3g1419 986 ProSiteProfiles Protein kinase domain profile. 656 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1419 986 SUPERFAMILY PYP-like sensor domain (PAS domain) 471 570 IPR035965 -
Apr3g1419 986 TIGRFAM sensory_box: PAS domain S-box protein 480 570 IPR000014 -
Apr3g1419 986 TIGRFAM sensory_box: PAS domain S-box protein 198 292 IPR000014 -
Apr3g1419 986 CDD PAS 199 288 IPR000014 -
Apr3g1419 986 SUPERFAMILY PYP-like sensor domain (PAS domain) 193 285 IPR035965 -
Apr3g1419 986 MobiDBLite consensus disorder prediction 368 382 - -
Apr3g1419 986 MobiDBLite consensus disorder prediction 1 15 - -
Apr3g1419 986 SMART pac_2 532 574 IPR001610 -
Apr3g1419 986 SMART pac_2 249 291 IPR001610 -
Apr3g1419 986 ProSiteProfiles PAS repeat profile. 172 243 IPR000014 -
Apr3g1419 986 MobiDBLite consensus disorder prediction 417 451 - -
Apr3g1419 986 CDD STKc_phototropin_like 654 962 - -
Apr3g1419 986 Gene3D PAS domain 444 608 - -
Apr3g1419 986 MobiDBLite consensus disorder prediction 116 168 - -
Apr3g1419 986 SUPERFAMILY Protein kinase-like (PK-like) 638 962 IPR011009 -
Apr3g1419 986 MobiDBLite consensus disorder prediction 19 42 - -
Apr3g1419 986 MobiDBLite consensus disorder prediction 335 404 - -
Apr3g1419 986 ProSiteProfiles PAS repeat profile. 455 528 IPR000014 -
Apr3g1419 986 SMART serkin_6 656 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1419 986 ProSiteProfiles PAC domain profile. 529 583 IPR000700 -
Apr3g1419 986 SMART pas_2 457 526 IPR000014 -
Apr3g1419 986 SMART pas_2 174 243 IPR000014 -
Apr3g1419 986 MobiDBLite consensus disorder prediction 143 157 - -
Apr3g1419 986 Pfam PAS domain 478 570 IPR000014 -
Apr3g1419 986 Pfam PAS domain 193 289 IPR000014 -
Apr3g1419 986 Gene3D Phosphorylase Kinase; domain 1 655 739 - -
Apr3g1419 986 PANTHER FLIPPASE KINASE 1-RELATED 120 982 - -
Apr3g1419 986 ProSiteProfiles PAC domain profile. 246 300 IPR000700 -
Apr3g1419 986 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672|GO:0006468
Apr3g1419 986 PANTHER PHOTOTROPIN-1 120 982 - -
Apr3g1419 986 CDD PAS 470 570 IPR000014 -
Apr3g1419 986 Pfam Protein kinase domain 658 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1419 986 MobiDBLite consensus disorder prediction 961 986 - -
Apr3g1419 986 MobiDBLite consensus disorder prediction 425 439 - -
Apr3g1419 986 Gene3D PAS domain 186 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1419 Apr-Chr3 28748477 28762744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1419 14 986 AGC Kinase Gene Family AT3G45780 70.251 0.0 1349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Apr3g1419 Pkinase 3.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1419 K20715 - gmx:100804524 1681.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1419 3 28748477 28762744 Apr3g1419 3 28748477 28762744 ECH
Apr2g2244 2 27564492 27577012 Apr3g1419 3 28748477 28762744 PCT