Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1417 ATGGGTTGCTTTTGTTGCTCACGAAAATCTTGTAAGAAATCGGTCACCGAAGACTTTGGCCACACCAATTTCACTGCTTCAGATAATGTCAAAGTTGATTTAAAAGCAAATGGGAAAAAGGAAGATGGGTCGAAAAGCGATCAACTTGCTCTGGATGTAAAGAATTTAAATTTGAAAGAGGAGGTTTCGGAGGGTGGTAAAGATAATGGTAACCGGGCGCAGACGTTTAGTTTTCATGAACTTGAAGTTGCAACAGGAAATTTTAGGTTGGATTGCTTTTTGGGTGAGGGAGGCTTTGGCAAGGTTTACAAGGGACACTTGGAGAGAATAAACCAGGTTGTGGCTATAAAGCAACTCGACCCAAATGGACTTCAAGGAATTCGGGAATTTGTTGTTGAAGTGTTGACATTGAGTTTGGCTGACGATCCTAATCTTGTCAAATTGATTGGATTTTGTGCTGAGGGAGAGCAGAGGCTATTAGTTTATGAGTACATGCCAATGGGATCTTTGGAGAACCATTTGTTTGATCTTTCGCCCGGTAGAAAACCTCTTGATTGGAACGCAAGAATGAAAATAGCTGCTGGCGCAGCTAAGGGTTTGGAATATCTACACGATAAAATGAAACCTCCAGTAATTTATCGTGATTTGAAATGCTCTAACATTTTGTTGGGAGAGGGATATCATCCTAAGTTGTCTGATTTTGGCTTGGCAAAAGTAGGCCCAAGTGGTGATAAGACCCATGTTTCAACAAGGGTTATGGGCACATATGGGTACTGTGCCCCAGATTATGCAATGACGGGTCAATTGACATTCAAGTCAGATATTTACAGCTTTGGGGTTGTTCTTTTGGAACTCATTACAGGCAGGAAAGCTATTGACCACACAAAACCTGCCAAGGAACAAAATCTGGTTGCATGGGCAAGACCTTTGTTCAGAGACAGGAGAAAATTCTCACAAATGGTTGACCCATTACTGGAAGGTAAATATCCCGTGAGAGGTTTATACCAAGCTCTAGCCATTGCTGCTATGTGTGTTCAAGAGCAGCCCAATATGCGGCCCGTTATAGTTGATGTGGTTACAGCACTACATTACCTTTCTTCTCAGAAGTATGATCCCCAAATTCATTCAGTACAAAGCTCCGGAAGAAGTCCAACTTCTCCAAGAACAATGAAAAGGGATGATAATCAAAGACACCTTTTTAGTAGTAATGAGCACGAGAGAGACAAATATTCAAACTAG 1239 0.4149 MGCFCCSRKSCKKSVTEDFGHTNFTASDNVKVDLKANGKKEDGSKSDQLALDVKNLNLKEEVSEGGKDNGNRAQTFSFHELEVATGNFRLDCFLGEGGFGKVYKGHLERINQVVAIKQLDPNGLQGIREFVVEVLTLSLADDPNLVKLIGFCAEGEQRLLVYEYMPMGSLENHLFDLSPGRKPLDWNARMKIAAGAAKGLEYLHDKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHTKPAKEQNLVAWARPLFRDRRKFSQMVDPLLEGKYPVRGLYQALAIAAMCVQEQPNMRPVIVDVVTALHYLSSQKYDPQIHSVQSSGRSPTSPRTMKRDDNQRHLFSSNEHERDKYSN* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1417 412 Pfam Protein kinase domain 93 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1417 412 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 395 - -
Apr3g1417 412 PANTHER OS07G0668900 PROTEIN 1 395 - -
Apr3g1417 412 CDD STKc_IRAK 94 362 - -
Apr3g1417 412 MobiDBLite consensus disorder prediction 387 412 - -
Apr3g1417 412 Gene3D Transferase(Phosphotransferase) domain 1 165 382 - -
Apr3g1417 412 ProSiteProfiles Protein kinase domain profile. 88 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1417 412 MobiDBLite consensus disorder prediction 373 412 - -
Apr3g1417 412 Gene3D Phosphorylase Kinase; domain 1 57 164 - -
Apr3g1417 412 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Apr3g1417 412 SUPERFAMILY Protein kinase-like (PK-like) 74 388 IPR011009 -
Apr3g1417 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Apr3g1417 412 SMART serkin_6 88 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1417 Apr-Chr3 28735098 28739434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1417 1 367 Glycoside Hydrolase AT3G07070 56.911 1.09e-146 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Apr3g1417 Pkinase 3.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1417 - - gmx:100804000 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1417 3 28735098 28739434 Apr3g1417 3 28735098 28739434 ECH
Apr2g2242 2 27554010 27557684 Apr3g1417 3 28735098 28739434 ECH
Apr4g1846 4 25584463 25587612 Apr3g1417 3 28735098 28739434 ECH
Apr2g2242 2 27554010 27557684 Apr3g1417 3 28735098 28739434 PCT