Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1416 ATGACTCCCTTGACGAGGATTTCGCAACAACCACCTCAAGGGCCAGTCATATGCTGGGAGAGATTTCTCCCTGTGAGATCAATAAAAGTATTGCTGGTGGAAGATGATGATTCAACACGCCATGTTGTTCGTGCTTTGTTACGTAATTGTAGTTATGAAGTCACCGCTGTTTCCAGTGGTCTTCAAGCATGGAAAGTCCTAGAAGATCCAGGAAATCACATTGATCTTGTCCTAACAGAGGTAGCTATGCCTGTGTTGTCCGGAATAGGTCTTTTGTGCAAGATCATGAGCCACAAAACTCTGAAGAATATCCCTGTGATTATGATGTCATCTCATGATTCTATGGGTATAGTCTTTAAGTGCTTGTCAAAAGGTGCAGTTGATTTTTTGGTGAAACCTATTCGGAGGAATGAACTTAAAAACCTCTGGCAGCATGTTTGGAGAAGATGTCACAGTTCTAGTGGTAGTGGGAGTGAAAGTGCAACCCACACCAGAAAATCTGCAAAGTCGAGAAGTAATTATGCATATGAAAACAATAGTGATAGCAGTGATGAGAATGACTACGGAAGCAGAGGCTTGAGTGTTCGAGACGGAAGTGACAATGGAAGTGGCACTCAGAGTTCATGGACTAAATGTCTGGCTAAAGTTGGCAGTCCTCATCCAGTTTCACCTCATAAACAATTGGTTGATGCCCCTGATAGCACATGTGCCCAAGTGATGCATACAAAGCCTGAAAAAGTTAGCAGTAGATGGGTGCATGCAACAGAAAAAGAGTGCCGTGAACTTATTGATCATCTTGATGAAGTTGCAATGGGTAAAGACTTGGCTATGGGAATATCTTTGAATATGCAACTAGAGCATCCACCTGAGGAACTGTCTAGCAACCCAATGGGTAAAGTGATAAATAAGATGCCTGGTGTAGAAGATATGCAGCTCATTAAAGGACAGAGTAATGTCTGTGAAAAAGGACAACCAGAATACAATGATGATAAAACCAGAACACAGGAAAATCAGGCTACGAATGTTGTTGATGTTACTGATAGCAACAGTCCACAAGGTGAAAGCAGAGACTTGAATACTCCAAATGGGTTTTATGGTTGCTCACAAACAAAAGCAAACTGTTGCTTCAAACAGCATCCGTCCCTTGAACTAACTTTGAAAAGGCTGGGAGAAGTAAGAGATGCTAAAAATGTCACTGGTGATGAATGCAATGTCTTAAGACATTCAGATCTTTCAGCATTTTCAAAATATAATACTGCATCTTCTGCTAACCAGGCGCAAACTGGAAATGTGGGAAGCTGTTCCCCTTTAGACAACAGCTCGGCTGCACCAAATACAGATACAATGCACAACTTTCCATCTTATTCCAATGGCACTCCAAATCAACAGTCTAATGGGAGCAACATCAATGACATGGCCTCTACTAATACATATCTTGGCACCAAACCTGAAACTTATGACAAGAAGCCAGAGTCCATAAGAGGTATTGGTTCGTTTAATTCTTCTGAACTCCAAACTGTGCAGAACAATAGTATCTCTTCATCTCAGAAGAAAACTTCCGTTCGGGAGGAATATACAGAAATTTTTAAAGGACAAGTGGGAGGCTCTGAACAAGGCTTCCAAGTTGAACACACTCACTATCAGCTTCACCATTATAATCACATTGCCCATAAAGCTGCAGTAGATCTCCGATCAGAGCATGATCTCATACTGAAAAGCTCAACCAAAGCTGCTCAACAATGCGTATCATCAAATGCATTTGGAGGGCCGGCAGAAAGTAATGCTGCAAACTATGGTATGGATGGAAATGCAGTGGAGAGCGATCATGGGAGCAATGGACAGGACGGCAGCAACACTTTGACCATCAGAACGATAAATGTGGGAAACGGCAATGTGACTGCTGGAAGCATTGGAGTTGGCGGCATTGAAAGGAAAATCATTGGGAATGGGGCAGATGAAGGACGACTTGCATTGAGAGAAGCTGCTTTGACCAAATTTCGTCAAAAGAGAAAAGAAAGATGCTTTGAGAAGAGGGTACGATATCACAGCAGGAAAAAACTAGCAGAACAGCGGCCACGTATTAGGGGACAATTTGTTAGACGAATAGTGTCTGATGCCAAAGAAGAAAGAGATAAACAAAACGACATGGTATCCGTGGATAATTCTAGTGACATTCCGCAATAA 2184 0.4212 MTPLTRISQQPPQGPVICWERFLPVRSIKVLLVEDDDSTRHVVRALLRNCSYEVTAVSSGLQAWKVLEDPGNHIDLVLTEVAMPVLSGIGLLCKIMSHKTLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSSSGSGSESATHTRKSAKSRSNYAYENNSDSSDENDYGSRGLSVRDGSDNGSGTQSSWTKCLAKVGSPHPVSPHKQLVDAPDSTCAQVMHTKPEKVSSRWVHATEKECRELIDHLDEVAMGKDLAMGISLNMQLEHPPEELSSNPMGKVINKMPGVEDMQLIKGQSNVCEKGQPEYNDDKTRTQENQATNVVDVTDSNSPQGESRDLNTPNGFYGCSQTKANCCFKQHPSLELTLKRLGEVRDAKNVTGDECNVLRHSDLSAFSKYNTASSANQAQTGNVGSCSPLDNSSAAPNTDTMHNFPSYSNGTPNQQSNGSNINDMASTNTYLGTKPETYDKKPESIRGIGSFNSSELQTVQNNSISSSQKKTSVREEYTEIFKGQVGGSEQGFQVEHTHYQLHHYNHIAHKAAVDLRSEHDLILKSSTKAAQQCVSSNAFGGPAESNAANYGMDGNAVESDHGSNGQDGSNTLTIRTINVGNGNVTAGSIGVGGIERKIIGNGADEGRLALREAALTKFRQKRKERCFEKRVRYHSRKKLAEQRPRIRGQFVRRIVSDAKEERDKQNDMVSVDNSSDIPQ* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1416 727 MobiDBLite consensus disorder prediction 151 208 - -
Apr3g1416 727 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 694 IPR045279 GO:0009736
Apr3g1416 727 SMART REC_2 28 143 IPR001789 GO:0000160
Apr3g1416 727 Gene3D - 27 186 - -
Apr3g1416 727 ProSiteProfiles CCT domain profile. 659 701 IPR010402 GO:0005515
Apr3g1416 727 MobiDBLite consensus disorder prediction 151 189 - -
Apr3g1416 727 Pfam Response regulator receiver domain 30 141 IPR001789 GO:0000160
Apr3g1416 727 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 12 694 - -
Apr3g1416 727 ProSiteProfiles Response regulatory domain profile. 29 147 IPR001789 GO:0000160
Apr3g1416 727 CDD psREC_PRR 30 133 - -
Apr3g1416 727 Pfam CCT motif 659 700 IPR010402 GO:0005515
Apr3g1416 727 MobiDBLite consensus disorder prediction 704 727 - -
Apr3g1416 727 MobiDBLite consensus disorder prediction 598 617 - -
Apr3g1416 727 SUPERFAMILY CheY-like 26 152 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1416 Apr-Chr3 28715804 28726394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1416 12 434 Response Regulator Gene Family AT5G60100 48.157 9.22e-98 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Apr3g1416 Response_reg 9.6e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1416 K12129 - gmx:100785796 1033.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1416 3 28715804 28726394 Apr3g1416 3 28715804 28726394 ECH