Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1413 ATGTTAGATCTTAATCTCAATGCGGAGTCGACCGATTCGACTCAGAACGGCGGCTCGCCGTTTCTGTTGAAGAACTTTCCAGAAGGTTCGTGGAATCAAATGGCGGAGTCAGGGACCTCGAATTCCTCCGTCGTCAATGCGGACGGGTCTAGTAACGGTGGAGGCGACGAGGACTCGTGCTCTACACGCGCTGATGACGTGTTCACCTTCAATTTCAATATTCTTAAAGTGGAAGGGGGGAACGACGTTGTAACGAAGGAACTGTTCCCGGTGAGTGGAGGAGTTAAAGGAAGAGATGAAGGTGGGTCCGGGAATTGGCAGGGGAAAGCTACGACGTCGTTTCCGACGAGGAATGGCCTCGCGGATCTTTCGTTTGATCGCGAGGTGAAGATGGTTCAGCCTCAGCCTCAGCAACCAGCCAAGAAGAGTAGGAGGGGACCAAGGTCTCGGAGCTCGCAATACAGAGGGGTTACCTTTTACAGGCGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACAGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAATTCAGGGGTGTTGATGCTGACATCAATTTCAATCTAAGTGATTACGAGGATGATCTTAAACAGATGAAGAATTTATCCAAGGAGGAATTTGTGCATATACTCCGCCGCCAAAGTACTGGTTTCTCTAGAGGAAGTTCTAAATACCGTGGAGTAACGCTCCACAAATGTGGTCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGGCTTATGACAAGGCAGCTATCAAATGCAATGGAAGGGAAGCAGTGACTAACTTTGAGCCTAGTACATACGAAGGAGAGATGAAGTCTGCAGTCATTAATGAAGGTGGCAGTCAGAATCTTGATCTCAATTTGGGCATAGCAACTCCAGGACCTGTTCCCAAAGAAAATTGGGGGCAACCTCAGTTCCCCTCCGTCCCTTACAACATGCACGGTGGAAGATATTCTAGGATGGAAACCAATGTTAATTCAGGAATAGGTAATCCATTTCTGAAAAGGCTGGTTGTAACTGAAGAGCGTCCTTCTGTATGGAATGGCATGTATCCTAGTTTCTTTCCCAACGAGGAAAGAGCAGAGAGAATCGGCATTGATCCTTCAAAAGGACTTCCCAATTGGGCGTGGCAAACACATGGCCAAGTCACTGCTAGCCCATTATCACCGTTCTCTGCTGCAGCATCATCAGGATTCTCAAATTCAGCTACCTTTCCATCGACTACCATGTTTCCAACAGGATCTATGAACTCAATTGGGCAGAGTCTCTGTTTTACTTCATCCAGCTCACCTAGCAGCAATGCATCTCAAAATTATTACCACGTTAAGCCCCCACAGGGACCACCCTAG 1422 0.4796 MLDLNLNAESTDSTQNGGSPFLLKNFPEGSWNQMAESGTSNSSVVNADGSSNGGGDEDSCSTRADDVFTFNFNILKVEGGNDVVTKELFPVSGGVKGRDEGGSGNWQGKATTSFPTRNGLADLSFDREVKMVQPQPQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEPSTYEGEMKSAVINEGGSQNLDLNLGIATPGPVPKENWGQPQFPSVPYNMHGGRYSRMETNVNSGIGNPFLKRLVVTEERPSVWNGMYPSFFPNEERAERIGIDPSKGLPNWAWQTHGQVTASPLSPFSAAASSGFSNSATFPSTTMFPTGSMNSIGQSLCFTSSSSPSSNASQNYYHVKPPQGPP* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1413 473 Gene3D AP2/ERF domain 152 210 IPR036955 GO:0003700|GO:0006355
Apr3g1413 473 Gene3D AP2/ERF domain 244 288 IPR036955 GO:0003700|GO:0006355
Apr3g1413 473 MobiDBLite consensus disorder prediction 131 154 - -
Apr3g1413 473 MobiDBLite consensus disorder prediction 451 465 - -
Apr3g1413 473 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 435 - -
Apr3g1413 473 CDD AP2 153 211 IPR001471 GO:0003700|GO:0006355
Apr3g1413 473 SMART rav1_2 153 215 IPR001471 GO:0003700|GO:0006355
Apr3g1413 473 SMART rav1_2 245 293 IPR001471 GO:0003700|GO:0006355
Apr3g1413 473 MobiDBLite consensus disorder prediction 94 117 - -
Apr3g1413 473 MobiDBLite consensus disorder prediction 451 473 - -
Apr3g1413 473 ProSiteProfiles AP2/ERF domain profile. 153 209 IPR001471 GO:0003700|GO:0006355
Apr3g1413 473 SUPERFAMILY DNA-binding domain 244 288 IPR016177 GO:0003677
Apr3g1413 473 CDD AP2 244 289 IPR001471 GO:0003700|GO:0006355
Apr3g1413 473 MobiDBLite consensus disorder prediction 1 21 - -
Apr3g1413 473 SUPERFAMILY DNA-binding domain 152 210 IPR016177 GO:0003677
Apr3g1413 473 MobiDBLite consensus disorder prediction 1 59 - -
Apr3g1413 473 Pfam AP2 domain 153 201 IPR001471 GO:0003700|GO:0006355
Apr3g1413 473 MobiDBLite consensus disorder prediction 30 59 - -
Apr3g1413 473 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1413 Apr-Chr3 28629443 28633794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1413 1 473 AP2-EREBP Transcription Factor Family AT5G60120 44.101 5.60e-101 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr3g1413 AP2 6.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1413 K09284 - gmx:100788303 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1413 3 28629443 28633794 Apr3g1413 3 28629443 28633794 ECH
Apr2g2238 2 27493318 27497524 Apr3g1413 3 28629443 28633794 ECH
Apr2g2238 2 27493318 27497524 Apr3g1413 3 28629443 28633794 PCT