Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1407 ATGGATCAGTTCATAGAAAATTTGCCTCCAATGGATCTGATGCGGTCCGAGAAGATGACCTTCGTTCAACTCATCATTCCCGCCGAGTCCGCTCATCGAGCCATCACCTATTTGGGCGAACTCGGTCTCCTTCAATTCCGAGACTTAAATGCTGAAAAAAGCCCCTTCCAGAGAACGTTTGTTAACCAGGTAAAACGATGTGCTGAAATGTCAAGAAAGCTACGATTCGTCAAGGATCAAATAAATAAAGCCGGTCTAATGTCTCCGCTTTCTGTCTTGCAATCAGATATTTATCTAGAGGATTTAGAGGTACAACTTGCTGAGCATGAACATGAGCTAATTGAAATGAATTCTAACAGTGAGAAACTTCAGCAATCATATAATGAACTCCTGGAGTTCAAGATTGTGTTACAAAAGGCATGTGGTTTTCTTGTTTCAAGTCGTGGCCATGCCATTTCAGAAGAGAGAGAACTTGAGGAGAATGTTTTCTCAAATGGAGGCTTTGTTGAAACGCCATTTTTGTTTGAACAGGAAATGAGCCCTGTACCATCAAATCATTCTGGTTTAAGATTTATCAGTGGGATAATTTGTAAATCCAACGTTCTTAGGTTTGAGAGGATGTTGTTTCGTGCTACAAGAGGCAATATGCTTTTCAATCAGGCACCAGCTGACGAACAAATCATGGATCCTATTTCAACTGAAATGGTTGAAAAGACAGTGTTCGTTGTGTTTTTCTCTGGGGAGCAAGCAAGAACAAAGATTCTGAAAATTTGTGAAGCATTTGGTGCAAATTGTTATCCTGTTCCTGAAGACATAAGTAAACAGAGGCAAATAACTAAGGAGGTTTCATCCCGTCTTGCTGATTTAGAGGCAACTTTGGATGCTGGGATTAGGCATCGGAATAGGGCTTTAGCTTCTGTAGGATGTCATTTAACAAAATGGATGGACATGGTAAGAAGAGAGAAGGCTGTGTATGATACATTGAACATGTTAAATTTTGATGTCACCAAAAAATGTCTTGTTGGAGAGGGATGGTGCCCTATATTTGCAAAAACACAGATTCAGGAGGCACTACAACGTGCAACTTTTGACAGCAATTCTCAAGTTGGCATAATCTTTCATTCAATGGATGCACTGGAATCACCACCTACATATTTTAGGACCAACGGTTTCACAAGTCCATACCAGGAAATTGTTGATGCATATGGTGTTGCAAGATATCAAGAAGCAAATCCTGCAGTTTACACAACTATAATATTTCCTTTTCTTTTCGCGGTGATGTTTGGGGACTGGGGTCATGGGATTTGTCTGTTGCTGGGAGCACTGTTTCTTATAGCATGTGAAAGCAAGCTCAGCAATCAGCGACTTGGAAGCTTTATGGAGATGCTATTTGGTGGGCGCTATGTGCTACTCTTGATGTCACTATTTTCAATCTATTGTGGGTTAATCTACAATGAATTCTTCTCTGTTCCTTTTCACATATTTGGTGTGTCTGCTTACAAATGCCGAGATAGTTCATGCAGGGATGCACATACTACTGGCTTAGTAAAATACCGAGAACCATATCCATTTGGTGTGGATCCCAGCTGGCCTGGAAGTCGTTCAGAATTGGCTTTTCTAAACTCTCTCAAGATGAAAATGTCTATTCTGTTTGGTGTGGTGCATATGAACTTGGGCATTATATTAAGTTACTTCAATGCTCATTTCTTTCGCAACTCACTGGATATAAGGTACCAGTTTGTACCACAGATGATTTTCCTCAACTGTCTATTTGGGTATCTTTCCTTTCTCATTGTTGTCAAGTGGTGCACTGGCTCTCAGGCAGACCTTTATCATGTAATGATTTACATGTTTTTAAGCCCCTTTGACAATCTTGGTGAGAATCAATTGTTTTGGGGCCAAAGGCCACTTCAAGTGGTGTTACTACTCTTGGCTGTAATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATACTAAAGAAGATTCATAATGAGAGATTTCAAGGACGCACTTATGGTATACTTAATACCACTGAGGTGGATCTTGAGTTGGAACCAGATTCTGCCAGGCAACATCATGAGGAATTCAATTTCAGCGAAGTCTTTGTTCACCAAATGATTCACTCCATTGAGTTTGTTTTAGGTTCAGTTTCAAATACTGCCTCATATCTACGACTTTGGGCATTAAGCCTGGCTCACTCAGAACTTTCTACTGTTTTTTATGAGAAAGTCCTGCTACTTGCTTGGGGGTATGACAATCTTGTCATTCGGTTAGTGGGGCTAGCTGTTTTTGCCTTTGCGACTGCCTTTATACTACTTATGATGGAGTCTCTGAGTGCTTTTCTTCACGCCTTGCGTCTTCACTGGGTAGAATTTCAAAATAAATTCTACCATGGTGACGGCTACAAGTTCAGACCTTTTTCCTTTGCCTCCTTAACAGAGGATGAAAATTGA 2457 0.405 MDQFIENLPPMDLMRSEKMTFVQLIIPAESAHRAITYLGELGLLQFRDLNAEKSPFQRTFVNQVKRCAEMSRKLRFVKDQINKAGLMSPLSVLQSDIYLEDLEVQLAEHEHELIEMNSNSEKLQQSYNELLEFKIVLQKACGFLVSSRGHAISEERELEENVFSNGGFVETPFLFEQEMSPVPSNHSGLRFISGIICKSNVLRFERMLFRATRGNMLFNQAPADEQIMDPISTEMVEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQRQITKEVSSRLADLEATLDAGIRHRNRALASVGCHLTKWMDMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALQRATFDSNSQVGIIFHSMDALESPPTYFRTNGFTSPYQEIVDAYGVARYQEANPAVYTTIIFPFLFAVMFGDWGHGICLLLGALFLIACESKLSNQRLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPFHIFGVSAYKCRDSSCRDAHTTGLVKYREPYPFGVDPSWPGSRSELAFLNSLKMKMSILFGVVHMNLGIILSYFNAHFFRNSLDIRYQFVPQMIFLNCLFGYLSFLIVVKWCTGSQADLYHVMIYMFLSPFDNLGENQLFWGQRPLQVVLLLLAVIAVPWMLFPKPFILKKIHNERFQGRTYGILNTTEVDLELEPDSARQHHEEFNFSEVFVHQMIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFASLTEDEN* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1407 818 PANTHER VACUOLAR PROTON ATPASES 5 817 IPR002490 GO:0033179|GO:0046961|GO:1902600
Apr3g1407 818 Coils Coil 99 126 - -
Apr3g1407 818 Pfam V-type ATPase 116kDa subunit family 37 810 IPR002490 GO:0033179|GO:0046961|GO:1902600
Apr3g1407 818 PANTHER VACUOLAR PROTON ATPASE A1 5 817 - -
Apr3g1407 818 PIRSF ATP6V0A1 9 818 IPR026028 GO:0000220|GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1407 Apr-Chr3 28513539 28525507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1407 1 811 Primary Pumps ATPases(2) AT2G28520 79.877 0.0 1336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1407 K02154 - gmx:100786845 1525.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1407 3 28513539 28525507 Apr3g1407 3 28513539 28525507 ECH
Apr2g2234 2 27441094 27452649 Apr3g1407 3 28513539 28525507 PCT