Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1400 ATGGAGAGCAGTGACACATACACCCCCACTTCCTCTGCCCCACTTTCTCAATCTCCTACTTCTTCTTCTTCTTCACCCCCACCACCTCCTCAAGTTCCTCAAGTTGTCATGAGCCCTTGTGCTGCATGCAAGATTTTGAGGCGAAGATGTGCTGAAAAATGTGTATTGGCACCATATTTTCCTCCCACTGAACCTGCCAAGTTTACCATCGCACACCGTGTCTTTGGTGCCAGCAACATTATCAAGTTCTTACAGGAACTTCCGGAGTCTCAGAGAGCTGATGCAGTGACCAGTATGGTTTATGAGGCTAGTGCAAGAATAAGAGACCCTGTTTATGGTTGTGCGGGTGCAATTTGCCAGCTCCAAACACAGGTCAATGAGCTTCAAGCACAATTAGCCAAGGCACAAGCTGAGCTTGTAAACATGCAATTACAACAAGCCAATCTTGTTGCTCTAATTTGCATGGAAATGGCACAAAGTCCACAAGAATCATCACCACAACAATCAGTGGATAATTTCATTTCAAGTCCTCCACATAGCAGCGGCTACCAAAGTGGCATGAACTTCTTTGAGGAGAACAATAGCCTCAACTCATTATGGGAGCCTCTTTGGACATGA 618 0.4579 MESSDTYTPTSSAPLSQSPTSSSSSPPPPPQVPQVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQTQVNELQAQLAKAQAELVNMQLQQANLVALICMEMAQSPQESSPQQSVDNFISSPPHSSGYQSGMNFFEENNSLNSLWEPLWT* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1400 205 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 21 202 - -
Apr3g1400 205 ProSiteProfiles LOB domain profile. 38 139 IPR004883 -
Apr3g1400 205 MobiDBLite consensus disorder prediction 1 20 - -
Apr3g1400 205 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 21 202 - -
Apr3g1400 205 MobiDBLite consensus disorder prediction 1 32 - -
Apr3g1400 205 Coils Coil 118 145 - -
Apr3g1400 205 Pfam Lateral organ boundaries (LOB) domain 39 136 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1400 Apr-Chr3 28451164 28453223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1400 35 205 AS2 family AT2G28500 67.568 3.87e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr3g1400 LOB 3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1400 - - gmx:100789504 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1400 3 28451164 28453223 Apr3g1400 3 28451164 28453223 ECH
Apr2g2230 2 27403574 27405133 Apr3g1400 3 28451164 28453223 PCT