Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1399 ATGGACTTAAACGAAGACTTACACTGTTTACTATCGGAGCAACGCCGCGAACTCGCCGCCGCGGAAGCCATGGAATCCGACCTCGACTTCGCCTTCCGCCTCCAGTTACAGGAGGCTCTCGCCGCCTCCCTCGCCGTGCACCCCTCTTCCTCTTCCTCCACTGCCGCCGCCGTCGAAGAACCCGTCGTCGACGACGAAGGCGCATTGAATGCGACGGCACTCCAGAGGGAGGAGTTGGCGAGGACTGAGCGCGAGATGAAGGACAGGGACCAGAGCGAGAAGGAGATGCAGAAGATTAGGGAGGATCTGTGCCGTCGGATTCACGATCAGAAGGTGGCCAGCGAAATTCTGACGATTTCCGAGGTGGATTGGCAGCAATGGGGTGATAACTTTGAGAAACCCTTCGGAGAGGGTTCGTCTTCGTCTGGGGGAAGGAGTGGGACTCAGAGAGGGTTTGATGAAGATTCGATTTTTAGGGTTTATTTTACGGGTTTGGTGAGTGGGGAGAGTGTGAGGGGTCAGAATATCGGGTTGGCTGGGATTGGGGTTGCGATATGTGATCCTGCTAATAATTTGATATTTGAAGTTTCCAAGTCGTTGCTTGGGAATGGAACTAGTAAGATTGCTGCTGAGTTGAAGGCTTTGATTGAAGCCTTTAATGCTGCCATTACTTTGGACTTGAAGCGCGTTGCTTATTATTGCGATTATTATCCCCTCTTCCAATTCGTACGTGGAAAATGGCCGGTGAAACAGCGGAAGGTTGCTAAGCTAGTTGATCAGGTGAATCTGCTTCAAAGTAAATTTACGTACTGCAATCCAAGGCTTGTGGCTAGACATGATGTCAAGTTTGCATTTAAGCTTGCTAGAGATGCAATTGTTTCTCAGTCCATGAGGCCTGGAGACTCTGGGAGTAAAAAGAATCTGAATGAAACTTGTGTCATATGTTTGGAGGATACTAATGTCAATCAATTTAAGCTTGCTAGAGATGCAATTGTTTCTCAGTCCATGAGGCCTGGAGACTCTGGGAGTAAAAAGAATCTGAATGAAACTTGTGTCATATGTTTGGAGGATACTAATGTCAATCAAATTTTTTCAGTGGATGGCTGTCAACACCGCTATTGCTTTTCTTGCATGAGACAACATGTGGAGGTCAAGTTGCTTCATGGAATGGTTCCTAAATGTCCTCACGAGGGATGCAATCACGAGCTTCTACTTGACAGCTGCAGAAAGTTCTTGACTCATAAATTAGTTGCAACCATGCAGCAACGAAAATTGGAAGCTTCCATTCCCGTTACAGAGAAAATTTATTGCCCTTATCCAAGATGCTCTGCATTAATGTCAAAAAGTGAGGTTTTGGAGTACTCCAAAAACCTAATTGGTGAATCTCAACAATCAGGACCCAAGAAATGCATAAAATGTCATGGTCTTTTCTGTTTCAGCTGCAAGGTCCCTTGGCATAGCGGTATGACATGTTCTACTTACAAAAGGTTGAATCCTAACCCTCCTGCTGAAGATTTGAAGCTTAAGTTTCTGGCATCAAGGAGCCTATGGCGGCAGTGCGTGAAGTGTAACCATATGATCGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGTGGTTACGAGTTTTGCTATAACTGTGGGGCTGAGTGGAAAGAGAAAAAAGCAACATGTACTTGCCCACTTTGGGCCGAGGATAATATTTGGTTAGAGGATCACTCGGAAGAAGAAGAAGAGGAAGACGAAGATGATGATGATTATTATAACTCTGATTATTCTGATGATTTTTATTAA 1797 0.4558 MDLNEDLHCLLSEQRRELAAAEAMESDLDFAFRLQLQEALAASLAVHPSSSSSTAAAVEEPVVDDEGALNATALQREELARTEREMKDRDQSEKEMQKIREDLCRRIHDQKVASEILTISEVDWQQWGDNFEKPFGEGSSSSGGRSGTQRGFDEDSIFRVYFTGLVSGESVRGQNIGLAGIGVAICDPANNLIFEVSKSLLGNGTSKIAAELKALIEAFNAAITLDLKRVAYYCDYYPLFQFVRGKWPVKQRKVAKLVDQVNLLQSKFTYCNPRLVARHDVKFAFKLARDAIVSQSMRPGDSGSKKNLNETCVICLEDTNVNQFKLARDAIVSQSMRPGDSGSKKNLNETCVICLEDTNVNQIFSVDGCQHRYCFSCMRQHVEVKLLHGMVPKCPHEGCNHELLLDSCRKFLTHKLVATMQQRKLEASIPVTEKIYCPYPRCSALMSKSEVLEYSKNLIGESQQSGPKKCIKCHGLFCFSCKVPWHSGMTCSTYKRLNPNPPAEDLKLKFLASRSLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKEKKATCTCPLWAEDNIWLEDHSEEEEEEDEDDDDYYNSDYSDDFY* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1399 598 MobiDBLite consensus disorder prediction 77 96 - -
Apr3g1399 598 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 27 323 - -
Apr3g1399 598 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 324 572 - -
Apr3g1399 598 MobiDBLite consensus disorder prediction 572 598 - -
Apr3g1399 598 SMART ibrneu5 418 491 IPR002867 -
Apr3g1399 598 SMART ibrneu5 492 561 IPR002867 -
Apr3g1399 598 Gene3D - 488 595 - -
Apr3g1399 598 Coils Coil 4 24 - -
Apr3g1399 598 Pfam Reverse transcriptase-like 174 291 IPR002156 GO:0003676|GO:0004523
Apr3g1399 598 Pfam IBR domain, a half RING-finger domain 421 491 IPR002867 -
Apr3g1399 598 Pfam IBR domain, a half RING-finger domain 510 559 IPR002867 -
Apr3g1399 598 SUPERFAMILY RING/U-box 349 430 - -
Apr3g1399 598 Gene3D - 159 297 IPR036397 GO:0003676
Apr3g1399 598 Pfam Zinc finger, C3HC4 type (RING finger) 351 395 IPR018957 GO:0046872
Apr3g1399 598 ProSitePatterns Zinc finger RING-type signature. 369 378 IPR017907 -
Apr3g1399 598 SUPERFAMILY Ribonuclease H-like 175 292 IPR012337 -
Apr3g1399 598 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 27 323 IPR031127 GO:0004842|GO:0016567
Apr3g1399 598 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 324 572 IPR031127 GO:0004842|GO:0016567
Apr3g1399 598 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 430 IPR013083 -
Apr3g1399 598 ProSiteProfiles Zinc finger RING-type profile. 351 395 IPR001841 -
Apr3g1399 598 Coils Coil 82 102 - -
Apr3g1399 598 MobiDBLite consensus disorder prediction 47 96 - -
Apr3g1399 598 ProSiteProfiles TRIAD supradomain profile. 347 571 IPR044066 -
Apr3g1399 598 SUPERFAMILY RING/U-box 505 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1399 Apr-Chr3 28431388 28434562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1399 158 550 C3H Transcription Factor Family AT2G19610 31.407 1.16e-60 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1399 - - aprc:113858620 1139.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1399 3 28431388 28434562 Apr3g1399 3 28431388 28434562 ECH