Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1390 ATGGTTTTGGGGTCTTCTCTCCCGAGTCAAAAAGAACACGCAAAGCAAACCAAGCCACCCTCCCCATCACCATTCAACACAACACAAAACAATCGTGTCCATTGTCGGTGTGGACCTCCCTTTCCCCCAAACCCTAATCGCCACCTCCTCCGATTTCTTTCTATGGAAAAATTGAACTATTTTCGTATAAAAGAGCTCAAAGATGTACTCACTCAGTTAGGACTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGATCGCATATTATCTGTTCTCTCAGATGAACAAGTTTCCAAAATGTGGGCTAAGAAGAATGCTGTTGGAAAAGAACAGGTGGCAAAATTGGTGGATGACACATATAGGAAAATGCAGATATCCACGGCCACTGATCTAGCATCCAAGGGACAGGGTGGATCAGATAGCAGTAATGTAAAAGCTAAAGGTGAATTTGATGATTCCTTGCAATCAGATGCAAAGATTCGCTGTCTCTGTGGAAGTTCATTGGAAACAGAGGATTTGGTCAAGTGTGATGATCCAAGATGCCAGGTGTGGCAACACATCAGTTGCGTTATTATTCCAGAGAAACCTACAGAAGGCATCCCACCCGTTCCTGATAAATTTTATTGTGAACTCTGTCGTCTCAGTCGTGCTGACCCGTTTTGGGTTTCAGTGACGCACCCTTTGCTTCCTGTGAAGTTGATTGCAACCAGTAATCCAACTGATGGATCCAACCCAGTGCAGAATTTGGAGAGAACATTTCAACTTACAAGAGCAGACAAGGACTTGGTATCGAAGCCGGATTTTGATGTTGAGGCTTGGTGTATGCTTCTGAACGACAAGGTTCCATTCAGGATACACTGGCCGCAGTATACAGACCTGCAGGTCAATGGTTTTACTGTTCGTGTAAATAACAGACCTGGTTCACAGTTGCTTGGGGCTAATGGTCGTGATGATGGTCCAATTGTCACAGCATATGCAAAAGATGGAATTAATAAGATTTCCTTTACAGGATGTGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTAGAAGGCGGAACATGCAACAGATCCTAAACTTAATACCAAAGGAGTCTGAGGGTGAGCAATTTGAAGATGCTCTTGCTCGTGTTTGCCGTTGTGTTGGGGGCGGAAATGCAGCTGACGATGCTGATAGTGACAGTGATTTAGAAGTGGTTTCAGACACATTCAGCATCAACCTTCGATGTCCAATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAAACCTTGTATTCACATGGGTTGCTTTGATCTTGAGGTTTTTGTGGAAATGAATCAACGATCGAGGAAGTGGCAATGTCCTATATGCCTCAAAAACTATGCATTGGAGAATATAATCATTGACCCTTACTTCAACCGCATCACTTCTATGATGATAAATTGTAGTGAAGAAATTACAGAGGTTGAAGTGAAGCCTGACGGTTCTTGGCGTGTTAAGGCAAAGAATGAAAGTGAACGCCTGGAATTAGGGAACCTAGCACAATGGCACTTCCCTAATGGATCCCTCTGTGTTTCTACAGATGGAGATGTCAGGAGAGTGGAAACATTGAAGCAGGTCAAACAGGAAGGTGTTTCAGACAGTCCTACGGGTTTGAAAATTGGCATAAGGAAAAATCACAATGGAGTTTGGGAAGTCAGTAGACCTGAGGACACAAACACCTCTTCTGGTAATAGATTGAAAGAGGTTTTTGGAATCCCTGAACATGTTATTCCAATGAGCAGCAGTGCCACTGGAAGTGGACGGGATGGTGATGATCCTAGCGTAAACCAGGGTGGTGGGGGCCATATTGATTATTCTACTACCAATGGGGTTGAGATGGACTCTTTGTGTCTCAATAATGTTGATTTAGCATACGAATATCCTGCACACAACACTTCTACTCAGGTGGGTGGCGCAGAAATTATTGTTCTTAGTGATTCTGAAGAAGACAATGATATCTTGGTATCTCCTGCAGTTGCATATAAGGACAACCGAAATGATGCTGCAGATGGTTACTCTGTGCCACCACCTGGAATTGTTGATTCATATACTGAAGATCATAATCTTGGTGGAAATTCATGCTTGGGACTTTTTCCTAATGATGATGATTTTGGGATGTCTTCCCTGTGGTCATTGCCTTCTGGAACTCAGGCTGGTCCAGGATTCCAATTATTTGGTTCTGATGCAGATGTGTCAGATGCACTGGTCCATCTGCAGCATGGTCCTATTAATTGCTCCTCATCACTAACTGGTTATGCCATGGCTCCAGATACTGCTTTGGGATCTGGTAGTATCTTGCAAGATTCCTCTGCTGGTCGGTCAGATGCTGATTTGAATGGTGGTTTGGTGGACAATCCATTGGCATTCGGTGGAGATGATCCCTCTCTTCAGATTTTTCTCCCCACAAGACCAGCTGATTCATCCATGCAGAATGAATTGAGAGATCAAGCAAATGTGTCTAATGGTGTCTGCACAGAGGATTGGATATCCCTTAGTCTTGGAGGTGGTGCTGGTGGCAGTAATGGCAATGCTTCCACTCAAAATGAGTTGAATTCTAGACATCAAATCCCAGCCAGAGAAGCTTCTTTGCTCCTTGGTATGAATGATGTTAGATCTGACAAGGCAAGTAGGCAAAGATCAGATAGCCCTTTCTCATTTCCTCGCCAAAAGCGTTCTGTAAGGCCCCGCTTGTACCTTTCTATTGATACTGATTCAGAGTAA 2748 0.4363 MVLGSSLPSQKEHAKQTKPPSPSPFNTTQNNRVHCRCGPPFPPNPNRHLLRFLSMEKLNYFRIKELKDVLTQLGLSKQGKKQDLVDRILSVLSDEQVSKMWAKKNAVGKEQVAKLVDDTYRKMQISTATDLASKGQGGSDSSNVKAKGEFDDSLQSDAKIRCLCGSSLETEDLVKCDDPRCQVWQHISCVIIPEKPTEGIPPVPDKFYCELCRLSRADPFWVSVTHPLLPVKLIATSNPTDGSNPVQNLERTFQLTRADKDLVSKPDFDVEAWCMLLNDKVPFRIHWPQYTDLQVNGFTVRVNNRPGSQLLGANGRDDGPIVTAYAKDGINKISFTGCDARIFCLGVRIVRRRNMQQILNLIPKESEGEQFEDALARVCRCVGGGNAADDADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMINCSEEITEVEVKPDGSWRVKAKNESERLELGNLAQWHFPNGSLCVSTDGDVRRVETLKQVKQEGVSDSPTGLKIGIRKNHNGVWEVSRPEDTNTSSGNRLKEVFGIPEHVIPMSSSATGSGRDGDDPSVNQGGGGHIDYSTTNGVEMDSLCLNNVDLAYEYPAHNTSTQVGGAEIIVLSDSEEDNDILVSPAVAYKDNRNDAADGYSVPPPGIVDSYTEDHNLGGNSCLGLFPNDDDFGMSSLWSLPSGTQAGPGFQLFGSDADVSDALVHLQHGPINCSSSLTGYAMAPDTALGSGSILQDSSAGRSDADLNGGLVDNPLAFGGDDPSLQIFLPTRPADSSMQNELRDQANVSNGVCTEDWISLSLGGGAGGSNGNASTQNELNSRHQIPAREASLLLGMNDVRSDKASRQRSDSPFSFPRQKRSVRPRLYLSIDTDSE* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1390 915 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 494 IPR013083 -
Apr3g1390 915 MobiDBLite consensus disorder prediction 881 915 - -
Apr3g1390 915 Pfam SAP domain 59 89 IPR003034 -
Apr3g1390 915 SMART PHD_3 161 213 IPR001965 -
Apr3g1390 915 MobiDBLite consensus disorder prediction 1 33 - -
Apr3g1390 915 SUPERFAMILY FYVE/PHD zinc finger 154 216 IPR011011 -
Apr3g1390 915 MobiDBLite consensus disorder prediction 586 615 - -
Apr3g1390 915 Gene3D SAP domain 54 109 IPR036361 -
Apr3g1390 915 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 218 IPR013083 -
Apr3g1390 915 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 56 856 - -
Apr3g1390 915 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 56 856 - -
Apr3g1390 915 CDD PHD_Bye1p_SIZ1_like 161 212 - -
Apr3g1390 915 Pfam PHD-finger 161 213 IPR019787 -
Apr3g1390 915 ProSitePatterns Zinc finger PHD-type signature. 162 212 IPR019786 -
Apr3g1390 915 SMART sap_9 58 92 IPR003034 -
Apr3g1390 915 SUPERFAMILY SAP domain 56 111 IPR036361 -
Apr3g1390 915 Pfam MIZ/SP-RING zinc finger 406 454 IPR004181 GO:0008270
Apr3g1390 915 ProSiteProfiles Zinc finger SP-RING-type profile. 393 476 IPR004181 GO:0008270
Apr3g1390 915 ProSiteProfiles SAP motif profile. 58 92 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1390 Apr-Chr3 28359254 28398604 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr3g1390 PHD 2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1390 - - aprc:113857557 1823.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1390 3 28359254 28398604 Apr3g1390 3 28359254 28398604 ECH
Apr2g2226 2 27362919 27376073 Apr3g1390 3 28359254 28398604 PCT