Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1387 ATGGAAATTGATCTGAACCATGAAGTGACTGAGGTTGAGAAGAATGCATTCTGTGATAGGGAATGTGAGAAAGGTGCTTGTGTCAGATGTTGGTCCTCTTCAACTTGTTCGTCTTCTAGTTCCTCTTCAGCTCTTGTGTCTTCCTCTTACCTTGAGCTTTGGCATGCTTGTGCTGGCCCTCTCACTTCTCTTCCTAAGAAAGGAAATGTGGTGGTCTATTTTCCACAAGGTCACTTAGAACAAGTTGCCTCTTTCTCTCCTTTCACACCATTGGAGATTCCCACCTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATGTCCAACTACTTGCCAACAAGGAGAATGATGAGGTTTATACTCAGGTTACTTTGCTTCCTCAGTCTGAGTTGTCAGGGATGAACTCTGAGGGCAAAGAAGTTGAGGAAATGGGAGCAGAAGAAGAGAGTGATGAAAGATCACCAACAAAATCAACCCCTCACATGTTCTGCAAAACACTAACTGCTTCTGATACAAGCACTCATGGGGGCTTCTCAGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCACAAGAGCTTGTTGCAAAAGACCTGCATGGTGTGGAGTGGAAATTTCGTCACATTTACAGAGGTCAGCCAAGGCGTCATCTACTCACTACTGGGTGGAGTATTTTTGTAAGCCAAAAGAATCTTGTTTCTGGTGATGCGGTGCTCTTTCTAAGGGGCGAAAATGGTGAATTGAGATTGGGAATCAGAAGAGCTGTTCGACCCAGAAATGGTCTTCCTGAATCAATTATTGGTAGCCAGAACTGCTATCCCAATTTCCTTTCTTCTGTGGCAAATGCAATATCCACCAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCACGCGGATTTTGTTGTTCCATACAAAAAATATGTTAAAAGCATCAAGAATCCAATGACCATTGGTACAAGATTCAAAATGAGATTCGAAATGGACGAATCTCAAGAAAGAAGGTGTAGTGGTGGCACTTTGATTGGAACGAGTGATTTGGATCCCTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGACTAATCATCAAGACCGAGTGTCTCCATGGGAGATTGATCTTTCTGCTCCTTTGCCTCCCTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAACTGAGGACAGGTCTACAAGCTGCCTCACAGAGTCACCTCATCACTGCAGCAGGAGGCAGTGGATTGGTGGGCTTTGAGGAGTCTGTAAGATCACCTAAGGTCTTGCAAGGTCAAGAAAATGCAGGTTTTGTGTCACTCTACTATGGATGTGACACCGTAACCAACCGGCCAGGTTTTGAGATGAGTTCTCCAAGTCATCCAAATCTTGCATCAGCTGGAGTAAGAAAGGTTCCGTCTTCTGAGCTTAGTAGTGTTCACCCTTTCAGCTATGCAGGCTTCATGGAAACTAACAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATGTGTCCATTGAAATCCCTGACAGGAAAGGTTGATTTGAACCTTGGTGCTTGGGGAAAACCCAACCTAAGTTGCACAACTTTCAATCTTCATCAGGCAACCAAACCAAACTTTCAATCACCATATTTTCCTTATGGTGATATTCACCAAACTGGTCAAGCTAGCTTGTTTTGCTCAAAAAGCACCAGTTTCCAAAGAGAGAATGTCCCATATAACAGTCCATCTACTAAGGCAGGGATCATTATAAATGAAGTTGGAAGATCAGATCTCCCAAATGAGCATAAGCTGCAGGACAATATTTCTGCTGCTGCTGCTTCATTAGGGGCTGCAAGTATGGCGATTCCAAATGACAACAATGTTCAGGGAAAGGTAAATGCCTGCAAACTATTCGGGTTTCCTTTGTCTGGGGAAACTACTAATCAAAATTCACAGAACAGTGCTAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGCGGCTACAATGATCTGCTGAGTGAACTAGAGAGACTATTTGGCATGGAAGGCCTTCTAAAAGATCCTGATAAAGGATGGAGGATCCTGTACACTGACAGTGAGAATGACATAATGGTTGTTGGGGATGACCCTTGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACTCAAGAAGAAGTGGAAAAGATGACAATTGGGATGATAAGTGATGATACTAACAGCTGTTTGGAACAGGCACCAGTGATTATGGAGGCTTCAAAGTCTTCCTCGGTGGGTCAGCCAGATTATTCTCCAACTGCAGTTAGAGTCTAA 2391 0.4362 MEIDLNHEVTEVEKNAFCDRECEKGACVRCWSSSTCSSSSSSSALVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSPFTPLEIPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQSELSGMNSEGKEVEEMGAEEESDERSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESIIGSQNCYPNFLSSVANAISTKSMFHVFYSPRASHADFVVPYKKYVKSIKNPMTIGTRFKMRFEMDESQERRCSGGTLIGTSDLDPYRWPKSKWRCLMVRWDEDIETNHQDRVSPWEIDLSAPLPPLSIQSSPRLKKLRTGLQAASQSHLITAAGGSGLVGFEESVRSPKVLQGQENAGFVSLYYGCDTVTNRPGFEMSSPSHPNLASAGVRKVPSSELSSVHPFSYAGFMETNRFPRVLQGQEMCPLKSLTGKVDLNLGAWGKPNLSCTTFNLHQATKPNFQSPYFPYGDIHQTGQASLFCSKSTSFQRENVPYNSPSTKAGIIINEVGRSDLPNEHKLQDNISAAAASLGAASMAIPNDNNVQGKVNACKLFGFPLSGETTNQNSQNSAKRSCTKVHKQGSLVGRAIDLSRLSGYNDLLSELERLFGMEGLLKDPDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIGMISDDTNSCLEQAPVIMEASKSSSVGQPDYSPTAVRV* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1387 796 SUPERFAMILY CAD & PB1 domains 668 747 - -
Apr3g1387 796 MobiDBLite consensus disorder prediction 132 160 - -
Apr3g1387 796 SMART B3_2 164 266 IPR003340 GO:0003677
Apr3g1387 796 Gene3D - 663 757 - -
Apr3g1387 796 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 784 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr3g1387 796 Gene3D - 162 266 IPR015300 -
Apr3g1387 796 PANTHER AUXIN RESPONSE FACTOR 8 784 - -
Apr3g1387 796 SUPERFAMILY DNA-binding pseudobarrel domain 156 274 IPR015300 -
Apr3g1387 796 CDD B3_DNA 162 264 IPR003340 GO:0003677
Apr3g1387 796 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr3g1387 796 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Apr3g1387 796 Gene3D - 328 398 - -
Apr3g1387 796 ProSiteProfiles PB1 domain profile. 668 752 IPR000270 GO:0005515
Apr3g1387 796 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1387 Apr-Chr3 28339776 28346413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1387 46 796 B3 DNA Binding Superfamily AT5G60450 61.961 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr3g1387 AUX_IAA 8.2e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1387 - - gmx:100783513 1433.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1387 3 28339776 28346413 Apr3g1387 3 28339776 28346413 ECH
Apr2g2225 2 27355311 27361369 Apr3g1387 3 28339776 28346413 PCT