Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1384 ATGATGTCCGAAGAAGCCTTTTCTGTTGCTCCCAACACCATCAGAGGCTCCTTGGTTCATGTTCAAGAAGACCCCAACTCAAACTCAAACTCAAACCCTAATCCAAACCCTAATTCAAATCTAGCTAGGAAAAAGAGAAATCTACCCGGAACACCAGATCCAGATGCAGAAGTGGTAGCTCTGTCACCTAAGTCTCTTATGGCTACCAACCGTTTCATATGTGAAATTTGCAACAAGGGTTTTCAGAGAGACCAGAACTTGCAGCTGCATAGACGTGGACACAACTTGCCGTGGAAGCTGAGGCAGAGAACAAACAAAGATCAAGTGAAGAAGAAGGTGTACGTGTGCCCAGAGAAGAGTTGTGTGCACCATGATCCCTCTAGAGCCCTGGGAGACTTGACAGGGATAAAGAAACACTATAGCCGAAAGCATGGAGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATACGCAGTTCAATCGGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTTATAACGCATAGAGCCTTTTGTGACGCTTTGGCTGAAGAAAGTGCGAGGATAACTACAGTTCCAGCAGCTTTAAGTAACTTCAGAAGCGATCATCATTTGACTAATGCTCAAGCTTCGAGGGTCCCTCAGATTTTTCCCGGGTTTCATTCAGAATATGGTGGTTCAGGGTCAGAACCATTGGGCAATTATGTTGACTCGGATCAAGGACAACAAAAGCTAAGCCTACCACTATGGCTAGACCAAGCCAATTCTCAGCTTCACCCATTTAATTTTCCAAGCAAATCAAGTGCTTTCACTTCAGGAGCAAACTCTGCTAGCACTGTGCCTGATCTAGTGCAAACAATGGACATGTTTGGGTCACAGTGGGTGAATTACCGTTACCCAGAAACATCATTCACAAATGCCAACCTATGTGTGCTACCCCCACATGGACTGAAGCAAGAACAAGAAGAAAACAAAGGAGACTTGTCGCATAGCACAAGCTCTTTGTACTTGAGTAATCACAACCCAACTCACATGTCAGCCACCGCACTGTTACAGAAAGCGGTTCAAATGGGATCTCCAAGGATCAACGACCACATGTTTGGCCTTGTGGGAAGCAACAGGAATAACAACGACAACATTAGCCACATTGTTGAGCTTCGGAAACTGAACGAGTTCGTTAATGGGGAAGGCAATACCAACACCAACACCAACCTTGGTGGTGGGTATTTATTAAATGACTCAAACAACTCGTTTGTAGTACTGACGAACACAAAGGTTTTGAATCACCCGGTGATGCCGGTGGATGAAGAAACAACACCATCAATTGTGGGCAAGCAATTACGTTCAATAAGCTCAAATAACAAAAACATTCAGCTTGGTTTAACTAGAGACTTCTTGGGTGTTGGAGATGATGAATCAATAAGAAGACCCTTCTTGCAACAAGATCTGGTTGAATTTAATGCAATGGGGTCAGGCTCAGCCATGAACCTGCAGAGCCAGTACGGTGGACACTACTGCTAG 1575 0.4483 MMSEEAFSVAPNTIRGSLVHVQEDPNSNSNSNPNPNPNSNLARKKRNLPGTPDPDAEVVALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDQVKKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVPAALSNFRSDHHLTNAQASRVPQIFPGFHSEYGGSGSEPLGNYVDSDQGQQKLSLPLWLDQANSQLHPFNFPSKSSAFTSGANSASTVPDLVQTMDMFGSQWVNYRYPETSFTNANLCVLPPHGLKQEQEENKGDLSHSTSSLYLSNHNPTHMSATALLQKAVQMGSPRINDHMFGLVGSNRNNNDNISHIVELRKLNEFVNGEGNTNTNTNLGGGYLLNDSNNSFVVLTNTKVLNHPVMPVDEETTPSIVGKQLRSISSNNKNIQLGLTRDFLGVGDDESIRRPFLQQDLVEFNAMGSGSAMNLQSQYGGHYC* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1384 524 SUPERFAMILY beta-beta-alpha zinc fingers 71 169 IPR036236 -
Apr3g1384 524 MobiDBLite consensus disorder prediction 21 45 - -
Apr3g1384 524 Gene3D Classic Zinc Finger 51 125 - -
Apr3g1384 524 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 512 - -
Apr3g1384 524 SMART c2h2final6 149 169 IPR013087 -
Apr3g1384 524 SMART c2h2final6 72 94 IPR013087 -
Apr3g1384 524 SMART c2h2final6 114 144 IPR013087 -
Apr3g1384 524 MobiDBLite consensus disorder prediction 21 57 - -
Apr3g1384 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Apr3g1384 524 Gene3D Classic Zinc Finger 127 206 - -
Apr3g1384 524 Pfam Zinc-finger double-stranded RNA-binding 72 94 IPR022755 -
Apr3g1384 524 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Apr3g1384 524 PANTHER ZINC FINGER PROTEIN JACKDAW-LIKE ISOFORM X1 1 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1384 Apr-Chr3 28301462 28304606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1384 42 213 IDZ Gene Family AT3G45260 87.791 2.31e-115 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr3g1384 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1384 K25870 - gmx:100817691 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1384 3 28301462 28304606 Apr3g1384 3 28301462 28304606 ECH
Apr2g2221 2 27318906 27321971 Apr3g1384 3 28301462 28304606 PCT