Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1369 ATGGCGGAACCTCTTACAAACCCAAACACCGAACTCGCTTCCTCTAAAACCCTAAACCCAATTAACGTTCACGATTCCACCATGGAACCGCACCAAACACTTCCACTAGACGCTCAAATCCATCCACAAAACGACTACGTCGTTCCCACTAAGAAACGGCAGAGGGACGACGCCGACGCCGACGACGACGCTGACCGTTCGGTCCATCCGCTGTGGAAGACAAGCCTCTGTTCCTACTTCAGGCGCCACGGTGGCTCCTGTAGCCACGGCGACGCGTGCCGCTACGCGCACGGCGAGGAGGAGCTCCGTCCTCGGCCCGACAACACTTGGGACCAGACTTCAGAGCGAGCGAAGAAGGCGTTGAAATCTGAGACGCCCGAGAAACGCGACGTTTCGGAGGTTGTGATGATGACGGAGGCCGTCGTCGACGGCGATGCCGACGGCGAAGATGATGGTTGTGGCTCCAGTCACGCACTTAGTAAATGCTTGATGCATTTGCCGATGAAATGGAGCTCCGAGGTTTTGAGAAATTTTCTTAACAAAGAGGGTATTGCTTTTAAGCATGCTAAGAAAAAGAAAGGTATGGCGGTTGGTTTTCTTACTTTTGAAGATGAAGAACAAATGAAGAATTCAACGAAGGCTTTAGAAGGAAAATCAATTAGCAACAAAACTTTAAGGGTTGGTGATGTCATTCCTCGTTCATTTGAAAAGAAAAGTAACTCCAATGTTACATTGCATCAAGAATTAGATAAGGAGAATCCAATGGTTGATGTTCCTTCAAGTGAGACTTTGGATGCTGAAACGAACGATGATAACTTGGCTTTTGATGGTTCCGTTTCAAAGACAAGAAACGTGCGGGATGTAGTGACTCCTCTAGCTCATATGGCCTATGCTGACCAGTTGGAGCAGAAAAAAAACTCTCTCGTGAAGATTCTCAAAAAACTTACTAAAAATGCTCGTAAAGCTTGTCCAACCGGTGTTCCTCTTCCCGAGTGGGTTCTCAAGTCTAGGGAAATAGGTGGTCTTCCATGCAAACTAGAGGGTATTGTTGCATCTCCAATTGTAAATGGATATCGTAACAAGTGTGAATTTTCAGTTGGATATTCTCTGGAAGGAAAAGTGACTGTGGGCTTCATGCTTGGAAACTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCAGTGGACTGCCCAAATGTTTCTACGATTGCTGGCAAATATGCAAATATCTTTCAGGAATTTCTGCAGCATAGTGATCTACCAGTTTGGAACAGATTTAAAAATACCGGATTTTGGCGTCAATTGACGGTCCGAGAAGGGAGGACAAACGGAAGTGTTGTTGATGCTGGAACTTTTGATGGTATTGCAGAGGTCATGCTTATTGTGCAGGTCTCTACAGCAAACTTTGATGTTGCACAAGTAGCTACTGAATTTAAGAGACTTGCTCAGGCATTTGTTGCTGGAGCTACTTCGCATTGTCCAACATTACCCCTTACAGCTCTGATTGTTCAGGATCACCAAGGAATATCCAATGTAGCGCCAGCTGATGCTCCCATGCATCCACTTCCCCTTCCTAAAACAGTTGGTGATCCAGAGATGGGTGAAAACAATAATGCCACGGATGTAAGAATCCATGATTATATCAGCAATCTCCAGTTTTCTATATCACCAACAGCATTTTTTCAGGTTAACACACTTGCTGCTGAGAAGTTATACTCACTAGCTGGAGATTGGGCATGCTTAGGTCCTGACACATTGCTATTTGATATATGCTGTGGTACAGGAACTATTGGCCTGACTTTAGCACATCGAGTTGGTATGGTGATTGGCATTGAAATGAATGCTTCTGCAGTAACTGATGCCCATAGGAATGCTGAGATTAATGGCATAAAAAATGTTAAATTTATATGTGCAAAGGCAGAGGATGTGATGGGATCTCTGTTAAGGGAATACTTAGATGTTACTAAGGAACAAGTTGGTCATCCTAATATATCTGGAAATGGCAATGATATTCCTGTCGATACTGCCTGCCCAGAGCCTGAGAATGGTGAAATGGCATCTTGTTGTTCAGATAATAATGATGCAGAAGTCAGAAATGTGGTTCAGAAAGCTAGCACTTCTGAACAAGTTGACGGGATCTCTAAACAGGCAGAGGACGCGATGGGAGCTGTGTTAGGGGAAAACCTAAATGTGCCCGAGGAACAAGTCGATGATCCTAATATCTCTAAAAGTGGCAAGGACATTCCTGAGGATAGTGCCAATGCAGAGCCTGAAAATGGTGAAATGGCATCTCGATGTTCAGAAAATAACAGTGCCGAAGCAGGGAGTGTGGTTCAGCAGGATAGTGCTTCTGAAAATGGGAATACATCCTCGGAACAGTTTAAAAATGTTGTTGCTATTGTCGATCCTCCACGGGCTGGACTCCATCCAACTGTGATCAAAGCTTTGAGAACTCATCCACGCTTGCGGAGGCTTGTTTACATATCCTGTAATCCTGAAAGTTTGGTGGCAAATGCTATTGAGCTTTGTACTCCTTCCCCCATAAAAGTTGAGAAAGGAAATAAAGATAATCGAGGATGGAGAAATAGGAGCAGTGCTGGTCTAGCCCGCCACAGGGCCAAGTCTATGCCCATCTCAGAGGCCTTCCAGCCCATAAAAGCTATACCTGTTGATCTTTTTCCACATACCCAACACTGTGAATTGGTTATGCTTCTCGAAAGTGAATTGTTTTCAAGCATGACCTTTTTGCTGCATGCATCTTGTGTTTTTTCCTGTGGAATTACGGTACCTGGTGGCGAGAAATTATTATTGTATCCTAGAACATCAGTTAATACTCCAAGATCTCAAATTCTCTATCATTTAGACACAGCCGAATAA 2874 0.4454 MAEPLTNPNTELASSKTLNPINVHDSTMEPHQTLPLDAQIHPQNDYVVPTKKRQRDDADADDDADRSVHPLWKTSLCSYFRRHGGSCSHGDACRYAHGEEELRPRPDNTWDQTSERAKKALKSETPEKRDVSEVVMMTEAVVDGDADGEDDGCGSSHALSKCLMHLPMKWSSEVLRNFLNKEGIAFKHAKKKKGMAVGFLTFEDEEQMKNSTKALEGKSISNKTLRVGDVIPRSFEKKSNSNVTLHQELDKENPMVDVPSSETLDAETNDDNLAFDGSVSKTRNVRDVVTPLAHMAYADQLEQKKNSLVKILKKLTKNARKACPTGVPLPEWVLKSREIGGLPCKLEGIVASPIVNGYRNKCEFSVGYSLEGKVTVGFMLGNFREGVTAVEEAVDCPNVSTIAGKYANIFQEFLQHSDLPVWNRFKNTGFWRQLTVREGRTNGSVVDAGTFDGIAEVMLIVQVSTANFDVAQVATEFKRLAQAFVAGATSHCPTLPLTALIVQDHQGISNVAPADAPMHPLPLPKTVGDPEMGENNNATDVRIHDYISNLQFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVTDAHRNAEINGIKNVKFICAKAEDVMGSLLREYLDVTKEQVGHPNISGNGNDIPVDTACPEPENGEMASCCSDNNDAEVRNVVQKASTSEQVDGISKQAEDAMGAVLGENLNVPEEQVDDPNISKSGKDIPEDSANAEPENGEMASRCSENNSAEAGSVVQQDSASENGNTSSEQFKNVVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSPIKVEKGNKDNRGWRNRSSAGLARHRAKSMPISEAFQPIKAIPVDLFPHTQHCELVMLLESELFSSMTFLLHASCVFSCGITVPGGEKLLLYPRTSVNTPRSQILYHLDTAE* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1369 957 SUPERFAMILY CCCH zinc finger 69 104 IPR036855 GO:0046872
Apr3g1369 957 Gene3D Vaccinia Virus protein VP39 531 906 IPR029063 -
Apr3g1369 957 Gene3D - 162 231 IPR012677 -
Apr3g1369 957 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 290 905 IPR029063 -
Apr3g1369 957 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 87 905 IPR045850 -
Apr3g1369 957 ProSiteProfiles Zinc finger C3H1-type profile. 71 100 IPR000571 GO:0046872
Apr3g1369 957 CDD RRM_SF 162 227 - -
Apr3g1369 957 Pfam tRNA (Uracil-5-)-methyltransferase 793 842 IPR010280 GO:0006396|GO:0008173
Apr3g1369 957 Coils Coil 298 318 - -
Apr3g1369 957 SMART c3hfinal6 71 99 IPR000571 GO:0046872
Apr3g1369 957 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 87 905 - -
Apr3g1369 957 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 72 99 IPR000571 GO:0046872
Apr3g1369 957 Gene3D - 65 105 - -
Apr3g1369 957 SUPERFAMILY RNA-binding domain, RBD 165 234 IPR035979 GO:0003676
Apr3g1369 957 ProSitePatterns RNA methyltransferase trmA family signature 1. 801 833 IPR030390 -
Apr3g1369 957 MobiDBLite consensus disorder prediction 48 66 - -
Apr3g1369 957 MobiDBLite consensus disorder prediction 1 66 - -
Apr3g1369 957 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 288 907 IPR010280 GO:0006396|GO:0008173
Apr3g1369 957 Pfam Methyltransferase domain 586 644 IPR025714 -
Apr3g1369 957 MobiDBLite consensus disorder prediction 728 790 - -
Apr3g1369 957 MobiDBLite consensus disorder prediction 102 130 - -
Apr3g1369 957 CDD AdoMet_MTases 588 642 - -
Apr3g1369 957 MobiDBLite consensus disorder prediction 762 790 - -
Apr3g1369 957 MobiDBLite consensus disorder prediction 1 39 - -
Apr3g1369 957 MobiDBLite consensus disorder prediction 738 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1369 Apr-Chr3 28180106 28186153 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr3g1369 tRNA_U5-meth_tr 1.8e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1369 K15332 - gmx:100777601 1425.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1369 3 28180106 28186153 Apr3g1369 3 28180106 28186153 ECH