Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1368 ATGAGTGCTGAGGAAAAGCCTGTGAGTGAGGAACATGATGAAACTTCTTGCAGAAAAACAGTTTCGCTTCCAGTTCAAAAGGTTGATGATCCAATGGGGATTACTGAAGAAACCACACATGTTCCTCCTCGGAAGCGACAGCATCTTCTCCTAGAAATACCATCAAGAACAGAAGAGCGTTCCCAAGATTTTGTTCAAATTAAAATGCCAATGACACCAAGTCCCAATCCTACTCCCACTCCAAAAAGAGTGAACTTTCTTGTGAGCTCTCGCTCCGTTGATGCTCTAACAAATAATTCTCCTGGGCCTTCAACGTCAAGAGGCAAATCATCCATAAGAAGCCTCCTTCCAAAACTGAGCTTCAGGTATAAGGCACCGGCAGATATTGAAAAGGCAAATACTGCAGCCTCAGAAGTTTCCTCTTCAGGCATTGGAGAAAAGCCTTCAATCTCAAGATCATTGTCCCTTACTAAGATATTTACTCCAAGGATAAAGAGAACATCCTCATTACCTGTAGATGAAATTGGACATTCAAACCCAGAATCGGCTCATGGTGGAAGTGTTGGTGGTCCTCTAAATAAAAGAGAGGTCCAGCGAAAGATAGCTCGTTCTCTATCAGTGCCTGTCAATAACAAAGATAAAAGCATAAGGAGGATGGATTCGTTTTTCCGCATTGTTCCTTCCACTCCTCGTATAAAGGAAGGAAATGAATTGCCGAATTCATCCCCAACAAAGGATACAGAAAATGAAGATGCTGCTGACGGTGAAGATATAGCTGAAGAAGAGGCTGTGTGTAGAATCTGTCTTGTTGATCTATGTGAAGGAGGCGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGCATAAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGGAACCTGCCTGTAACTCTGCTACGGATCCAAAGTGTTCGAAATCGGAATAATGGATTAAATAGGTCTCATTTGGAAGATGTAAATGGATACAGAGTTTGGCAGGAAGTCCCAGTGCTTGTCATAGTCAGCATGCTCGCCTATTTTTGTTTTCTTGAACAGTTGTTGGTGGGAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTGCTGGGTTTACTCTCCTCTATGACATCATCAACCATGGTGAAGAGCAGGTTCATTTGGATTTATGCATCTGTCCAGTTTGCTCTGGTGGTTCTCTTTGCGCATATATTTTACTCAGTGGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTTGCCACATTTGCTGGTTTTGGTGTAGTGATGAGTGGAAGCTCTATTCTTGTGGAGTTTTTCAGATGGAGGAGAAGATTGCAGGCTTTATCAGAGCAGCAACAGGGCTCTCAACTGATGACACAAGCAGCACAAAATCTGCGAACTGTAAACACCCCACGTTCTGTTTCAGGTCCTTCCAACCTCAATCAAACTGTTGTGCAAAATCAACAGAACTCAAACCAGAGCTGA 1548 0.4315 MSAEEKPVSEEHDETSCRKTVSLPVQKVDDPMGITEETTHVPPRKRQHLLLEIPSRTEERSQDFVQIKMPMTPSPNPTPTPKRVNFLVSSRSVDALTNNSPGPSTSRGKSSIRSLLPKLSFRYKAPADIEKANTAASEVSSSGIGEKPSISRSLSLTKIFTPRIKRTSSLPVDEIGHSNPESAHGGSVGGPLNKREVQRKIARSLSVPVNNKDKSIRRMDSFFRIVPSTPRIKEGNELPNSSPTKDTENEDAADGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNNGLNRSHLEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRLQALSEQQQGSQLMTQAAQNLRTVNTPRSVSGPSNLNQTVVQNQQNSNQS* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1368 515 Pfam RING-variant domain 265 312 IPR011016 GO:0008270
Apr3g1368 515 ProSiteProfiles Zinc finger RING-CH-type profile. 257 319 IPR011016 GO:0008270
Apr3g1368 515 MobiDBLite consensus disorder prediction 170 192 - -
Apr3g1368 515 PANTHER OS02G0165000 PROTEIN 7 497 - -
Apr3g1368 515 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 7 497 - -
Apr3g1368 515 MobiDBLite consensus disorder prediction 1 48 - -
Apr3g1368 515 MobiDBLite consensus disorder prediction 231 255 - -
Apr3g1368 515 CDD RING_CH-C4HC3_MARCH 265 313 - -
Apr3g1368 515 MobiDBLite consensus disorder prediction 1 18 - -
Apr3g1368 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 320 IPR013083 -
Apr3g1368 515 SMART ringv_2 264 313 IPR011016 GO:0008270
Apr3g1368 515 SUPERFAMILY RING/U-box 261 316 - -
Apr3g1368 515 MobiDBLite consensus disorder prediction 493 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1368 Apr-Chr3 28168916 28174827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1368 221 319 C3H Transcription Factor Family AT2G37950 36.000 1.76e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1368 - - gmx:100815566 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1368 3 28168916 28174827 Apr3g1368 3 28168916 28174827 ECH
Apr2g2211 2 27255437 27259656 Apr3g1368 3 28168916 28174827 PCT