Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1357 ATGGCCATGGCTGTGGCTCAACACAGAGAGAGCAGTAGCAGTGGTAGCATTGAGAAGCACCTTGACTCTGGCAAGTATGTGAGGTACACTGCTGAACAAGTTGAGGCTTTGGAAAGGGTCTATGCTGAGTGCCCTAAGCCTAGTTCCCTCAGGAGACAGCAATTGATCAGGGAGTGCCCCATTCTTTCCAACATAGAGCCTAAGCAAATCAAGGTTTGGTTCCAGAATCGCAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCCCGGCTTCAGACTGTGAACCGCAAACTCACAGCAATGAACAAGTTGTTGATGGAGGAAAATGATCGGTTGCAGAAGCAGGTGTCACAGCTTGTGTGTGAGAATGGGTATATGCGGCAGCAATTGCATACAACGTCAGCAGCAACTACTGATGCTAGTTGTGATTCGGTGGTTACTACTCCTCAGCAATCCATGAGAGATGCTAATAACCCTGCTGGACTCCTATCAATTGCAGAGGATACCTTGACAGAGTTCCTTTCAAAGGCTACGGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACGAAGATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTTCGGGACTGTCGGAGCCTAGAAGTTTTCACTATGTTTCCTGCCGGAAATGGAGGAACCATTGAACTTGTTTACACACAGACGTATGCCCCAACAACACTGGCTCCTGCTCGGGATTTCTGGACTCTGAGATACACCACAAGTTTGGAAAATGGAAGTCTTGTGGTTTGTGAGAGGTCCCTGTCTGGTTCTGGCACAGGCCCTAATCCAGCTGCTGCTGCTCAGTTTGTGAGGGCTGAAATGCTCCCTAGTGGTTACTTGATTCGACCATGTGAGGGTGGAGGGTCAATCATCCACATAGTAGATCACCTAAATCTTGAGGCGTGGAGTGTGCCAGAAGTGCTTCGACCACTTTATGAATCATCAAAGGTGATAGCTCAGAAAATGACAATTGCGGCACTTCGCTATATCCGGCAAATAGCTCAAGAAACAAGTGGTGAAGTGGTTTATGGATTGGGTAGGCAGCCTGCTGTTTTGCGAACTTTCAGCCAGAGATTGAGCAGAGGCTTCAATGATGCTGTTAATGGATTCAATGATGATGGGTGGACTGTACTTAACTGTGATGGTGCTGAGGATGTAATTATTGCAGTTAATTCAACCAAAAATTTGAGTGGCACTTCTAATCCAGCGAGTTCTCTCACATTCCTTGGAGGAATCCTCTGTGCGAAAGCTTCTATGTTGCTCCAAAATGTCCCTCCTGCAGTTTTGGTTCGCTTTCTGAGGGAACACCGCTCTGAGTGGGCTGATTTCAATGTTGATGCTTACTCTGCTGCATCACTAAAAGCTGGCACCTATGCCTATCCAGGGATGAGGCCAACAAGATTCACTGGCAGTCAAATAATCATGCCTCTTGGCCATACAATTGAACACGAAGAGATGCTTGAAGTTATTAGGCTTGAAGGCCACTCTCTTGCTCAAGAAGACGCTTTTGTTTCTAGGGACATTCATCTCTTACAGATATGTAGTGGAATTGATGAGAATGCTGTGGGGGCATGTTCTGAGCTCATATTTGCTCCAATTGATGAAATGTTCCCAGATGATGCTCCATTGGTGCCTTCTGGTTTCCGCATCATTCCATTGGATTCAAAACCAGATACAATGACTACAAATCGGACCCTGGATTTGACATCTGGTTTTGAAGTGGGTCCGGCAACAGCAAATGGTGCCGATGCATCATCAAGTCATAACACTCGATCAGTGTTGACTATTGCCTTTCAATTCCCTTTTGACAGCAGCTTGCAAGATAATGTTGCAGTCATGGCACGGCAATATGTCCGAAGTGTAATTTCCTCTGTGCAGAGGGTTGCCATGGCTATTTCTCCATCTGGTATCAACACACCCGTTGGAGCAAAACTTTCTCCTGGTTCTCCAGAGGCTGTTACACTAGCTCACTGGATCTGCCAGAGCTATAGTTACTATTTGGGGTCCGACTTACTGAGTTCAGACTCTCTTGTTGGTGACATGATGCTGAAACATCTGTGGCATCATCAGGATGCCATTCTGTGTTGTTCGCTGAAGTCGTTACCAGTGTTCATATTTGCAAATCAGGCTGGCCTTGACATGTTGGAAACAACGCTAGTGGCTTTACAAGACATCACATTGGATAAAATATTTGATGAGTCTGGACGCAAGACATTGTTTGCTGACTTTGCTAAGTTAATGCAACAGGGATTTGCTTATCTGCCAGCTGGAATCTGCATGTCCACCATGGGACGGCATGTTTCATATGACCAAGCCATTGCATGGAAAGTGCTCACTGGGGAAGATAACACTGTTCATTGCTTGGCTTTCTCTTTCATAAATTGGTCTTTTGTATGA 2517 0.4625 MAMAVAQHRESSSSGSIEKHLDSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQQLHTTSAATTDASCDSVVTTPQQSMRDANNPAGLLSIAEDTLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQTYAPTTLAPARDFWTLRYTTSLENGSLVVCERSLSGSGTGPNPAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVIAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWTVLNCDGAEDVIIAVNSTKNLSGTSNPASSLTFLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGTYAYPGMRPTRFTGSQIIMPLGHTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPDTMTTNRTLDLTSGFEVGPATANGADASSSHNTRSVLTIAFQFPFDSSLQDNVAVMARQYVRSVISSVQRVAMAISPSGINTPVGAKLSPGSPEAVTLAHWICQSYSYYLGSDLLSSDSLVGDMMLKHLWHHQDAILCCSLKSLPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKTLFADFAKLMQQGFAYLPAGICMSTMGRHVSYDQAIAWKVLTGEDNTVHCLAFSFINWSFV* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1357 838 Gene3D - 198 380 IPR023393 -
Apr3g1357 838 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Apr3g1357 838 SMART HOX_1 22 88 IPR001356 GO:0003677
Apr3g1357 838 CDD START_ArGLABRA2_like 158 374 - -
Apr3g1357 838 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 838 - -
Apr3g1357 838 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 838 IPR044830 GO:0003700
Apr3g1357 838 SUPERFAMILY Bet v1-like 163 375 - -
Apr3g1357 838 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Apr3g1357 838 Coils Coil 94 121 - -
Apr3g1357 838 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Apr3g1357 838 CDD bZIP 77 116 - -
Apr3g1357 838 Gene3D - 18 91 - -
Apr3g1357 838 CDD homeodomain 25 85 IPR001356 GO:0003677
Apr3g1357 838 Pfam START domain 164 371 IPR002913 GO:0008289
Apr3g1357 838 Pfam Homeodomain 25 83 IPR001356 GO:0003677
Apr3g1357 838 SMART START_1 163 373 IPR002913 GO:0008289
Apr3g1357 838 Pfam MEKHLA domain 694 837 IPR013978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1357 Apr-Chr3 28082866 28089702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1357 1 838 Homeobox Transcription Factor Family AT5G60690 82.332 0.0 1442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr3g1357 START 4.7e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1357 K09338 - gmx:100804870 1585.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1357 3 28082866 28089702 Apr3g1357 3 28082866 28089702 ECH