Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1355 ATGACAAGGGTGTTTTCAATGAAGGAGGGTGAGAAGAGCTTGGATCCACAACTGTGGCACGCGTGTGCAGGTGGCATGGTTCAGATGCCACAAGTGAACTCCAAAGTATTCTACTTTCCACAAGGGCATGCGGAGCATGCTCATACCAACGTTGATCTGAGGGTTCCACCACTCATTCTATGCAAGGTTGCTGCAGTGAAATTCATGGCAGACCCAGAAACCGATGAGGTTTTTGCCAAGATAAGCCTGGTTCCTCTCAAAAGCTCAGAGCTTGGTTATGATGAAGACGGGGGTGACGAAGTGTTGGAAACTTCAGAAAAGCCTGCATCTTTTGCCAAAACTTTGACCCAATCAGATGCTAACAATGGTGGGGGGTTCTCAGTTCCAAGGTACTGTGCTGAAACCATCTTTCCTCGGCTTGATTACTCGGCTGAACCACCGGTTCAGACCGTGGTTGCAAAGGATGTTCATGGTGAGTTGTGGAAGTTTAGGCATATATATAGAGGCACACCACGTAGGCACTTGCTTACAACTGGGTGGAGCACTTTCGTGAACCAGAAGAAACTGGTTGCTGGTGATTCAGTGGTGTTTCTGAGGGCTGAGAATGGGGATCTTTGTGTTGGGATTCGTAGGGCTAAGAAGGGTATTGGGGGTGGTGGTTCTGAGGCCTCATCTGGGTGGAGCTCAGCTTCAGGTAATTGTGGTGTTGGGGCTTACGGTGGTTTCTCGTTTTTCATGAGAGAGGAGAACAAGATGTTGAGGAATGGTTGTGGTGGTCTGAGTGGAAGAGCAAGAGTGAGGCCTGAAGCTGTTGTGGAAGCTGTGACACTAGCTGCTAGCAAATATCCATTTGAAGTTGTTTATTATCCGAGAGCTAGCACTCCTGAGTTTTGTGTTAAGGCTTCTGCTGTTAGGGCGGCTATGAGAATTCAATGGTGTTCTGGGATGAGGTTCAAGATGCCCTTTGAAACTGAGGACTCTTCCAGGATAAGTTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTGTTGATCCCATCCGCTGGCCCAATTCCCCATGGCGACTTCTTCAGGTTACTTGGGACGAGCCAGATTTACTACAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTTGAATTGGTATCAAACATGCCAGCCATCAATTTCACACCCTTCTCTCCTCCAAGGAAGAAGCTACGGTTTCCACAACACCCGGACTTTCCACTTGATGTTCAGTTTCCAATACCAACGTTTTCAGGCAACCAGCTTGGGCCTAACAACCCCTTGTGTGGTTTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCAGATCTCCACCTTAACAATAAACTGCAGTTGGGGTTGCTTCCAACTAATAGCCAGCAACATGAAGTGCATAGTGGGATTTCAAATGGCAACATGACAAATCATGATAAGAGCAAAGAAAGCTTGTCATGCTTGCTGACCATGGGAAAATCTAATAAGAGTTTGGAGAAATCTGACGGTGTTGAGAAACACCAATTCTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATTTCTAGAGGGTGTTCTAGAAATGCATTGTCTCATAATTTTACTAGAAAAAATTCGCTAGATGAGGATAAGGACAAAGAAAAGTGCTTTTTTGATGACTCTCAATCTACGTTCTCACAGCAGTTTTCACCTGGAAAAGATTCTGCTGCTGAATTTTCTTGGCAACTTGGCTTGGATACTGGTCATTGCAAGGTTTTCTTAGAGTCAGAAGACGTGGGAAGGACACTGGACCTATCTCGTCTTGGTTCTTATGAAGAGCTTTATAGGAGACTTGCCAACATGTTTGACATAGAAAGATCTAAGATTTTCAACCACGTGTTCTACCGTGATGCAACAGGTGTGGTCAAGCAAACTGGAGACGAACCCTTCGGTGACTTCATGAAGACAGCAAAAAGATTGACAATTTTGACAAACTCTGGCAGCAAAAGTGTTAGAAGGGCCTGGATAACAGGAACTCGGAATGGTGAACATGGATTGGATGCATCAAATAAAACAGGTCCTCTGAGCATATTTGCTTAA 2106 0.4535 MTRVFSMKEGEKSLDPQLWHACAGGMVQMPQVNSKVFYFPQGHAEHAHTNVDLRVPPLILCKVAAVKFMADPETDEVFAKISLVPLKSSELGYDEDGGDEVLETSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKKGIGGGGSEASSGWSSASGNCGVGAYGGFSFFMREENKMLRNGCGGLSGRARVRPEAVVEAVTLAASKYPFEVVYYPRASTPEFCVKASAVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPAINFTPFSPPRKKLRFPQHPDFPLDVQFPIPTFSGNQLGPNNPLCGLSDNAPAGIQGARHAQIGISLSDLHLNNKLQLGLLPTNSQQHEVHSGISNGNMTNHDKSKESLSCLLTMGKSNKSLEKSDGVEKHQFLLFGQPILTEQQISRGCSRNALSHNFTRKNSLDEDKDKEKCFFDDSQSTFSQQFSPGKDSAAEFSWQLGLDTGHCKVFLESEDVGRTLDLSRLGSYEELYRRLANMFDIERSKIFNHVFYRDATGVVKQTGDEPFGDFMKTAKRLTILTNSGSKSVRRAWITGTRNGEHGLDASNKTGPLSIFA* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1355 701 Gene3D - 312 385 - -
Apr3g1355 701 SMART B3_2 111 213 IPR003340 GO:0003677
Apr3g1355 701 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Apr3g1355 701 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Apr3g1355 701 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 678 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr3g1355 701 Gene3D - 109 213 IPR015300 -
Apr3g1355 701 CDD B3_DNA 110 211 IPR003340 GO:0003677
Apr3g1355 701 PANTHER AUXIN RESPONSE FACTOR 8 678 - -
Apr3g1355 701 SUPERFAMILY DNA-binding pseudobarrel domain 106 212 IPR015300 -
Apr3g1355 701 Gene3D - 588 673 - -
Apr3g1355 701 Pfam Auxin response factor 274 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr3g1355 701 ProSiteProfiles PB1 domain profile. 589 667 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1355 Apr-Chr3 28061870 28066976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1355 7 673 B3 DNA Binding Superfamily AT4G30080 58.187 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr3g1355 B3 1.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1355 - - gmx:100814686 1137.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1355 3 28061870 28066976 Apr3g1355 3 28061870 28066976 ECH
Apr2g2198 2 27160873 27164628 Apr3g1355 3 28061870 28066976 ECH
Apr4g0195 4 1593587 1597982 Apr3g1355 3 28061870 28066976 ECH
Apr8g0487 8 4196663 4200727 Apr3g1355 3 28061870 28066976 ECH
Apr2g2198 2 27160873 27164628 Apr3g1355 3 28061870 28066976 PCT