Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1354 ATGGATGGTTGGCTTTGTTGTGTTTCTTTTTCAGGTATTGCTAATATGAAGAATTGTTGGGTTTTTGACAATAATTTGAATGGTCTATCGGATGAGATTCTTGATGATGTTATTGAATTTTTTGATTTCCCACTTGAAGATGTGGAAATTGATGGGGTGGAACAAGATTGGGATGATCAGTTTAAACTTGAAGAGCCATCTCTTAGAGTTTTTTCAGTATCATCGTCGGAGCTGAGTGTTCAAACTCTAAATGAGAATGCAAAACATGAGTGCAGTTTCTCTGCTTCTCTAGCAAAGACTGCTGGACCTACATGTGGCAAAACTATTCCCATCCAGAATGTCTCTTTTGACAGAAAAGAATTGCACCAATGTCAAACCTACAGTCCAGTTTCTGTTTTTGAAGGTGGTAGTGCTTCCTCAGTTGTGAACTCCACCTTGGAGTTACCTTTTATCCTGGCAAAGCGTCCCCGAGGAAAACGCCAGCGTCCCTCAAACTCCAGCCCACTATTCTCAATTCCTTTCTCCTCTACTTTGCCGTCTTTTCAAAAAAGTCCAAGGATAGATGACTCTGAATTAGAAATACAGCCCACTGGGAAATTATTAAGCAGTGTCAACAAGAAGCAGAGGGAAGAGGATATTTCCCTGCTAACTAGTAAAACGGAGACAAAGAGATCCTCATCACAGGAGTCAGTTGCACCCAGAAAATGCATGCATTGTGAGATGACAAAGACACCACAATGGAGAGAGGGACCAATGGGTCCCAAGACCCTGTGCAACGCTTGTGGAGTTCGATACAGGTCTGGCCGGCTCTTTCCTGAATACCGGCCTGCAGCTAGCCCTACTTTTGTAGCATCATTGCACTCAAACTCTCACAAGGTGGTCTTAGAAATGAGGAACAAAGCCACCCAGGCATTCAAGTAA 921 0.43 MDGWLCCVSFSGIANMKNCWVFDNNLNGLSDEILDDVIEFFDFPLEDVEIDGVEQDWDDQFKLEEPSLRVFSVSSSELSVQTLNENAKHECSFSASLAKTAGPTCGKTIPIQNVSFDRKELHQCQTYSPVSVFEGGSASSVVNSTLELPFILAKRPRGKRQRPSNSSPLFSIPFSSTLPSFQKSPRIDDSELEIQPTGKLLSSVNKKQREEDISLLTSKTETKRSSSQESVAPRKCMHCEMTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNSHKVVLEMRNKATQAFK* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1354 306 ProSitePatterns GATA-type zinc finger domain. 236 261 IPR000679 GO:0006355|GO:0043565
Apr3g1354 306 MobiDBLite consensus disorder prediction 181 234 - -
Apr3g1354 306 ProSiteProfiles GATA-type zinc finger domain profile. 230 266 IPR000679 GO:0006355|GO:0043565
Apr3g1354 306 PANTHER GATA TRANSCRIPTION FACTOR 35 301 - -
Apr3g1354 306 MobiDBLite consensus disorder prediction 204 218 - -
Apr3g1354 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 233 293 - -
Apr3g1354 306 SMART GATA_3 230 280 IPR000679 GO:0006355|GO:0043565
Apr3g1354 306 Gene3D - 231 280 IPR013088 GO:0006355|GO:0008270
Apr3g1354 306 CDD ZnF_GATA 235 282 IPR000679 GO:0006355|GO:0043565
Apr3g1354 306 Pfam GATA zinc finger 236 269 IPR000679 GO:0006355|GO:0043565
Apr3g1354 306 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 35 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1354 Apr-Chr3 28049576 28052928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1354 29 305 C2C2-Gata Transcription Factor Family AT1G08010 38.047 3.15e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr3g1354 GATA 2.5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1354 - - gmx:100781869 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1354 3 28049576 28052928 Apr3g1354 3 28049576 28052928 ECH
Apr2g2197 2 27149669 27153882 Apr3g1354 3 28049576 28052928 ECH
Apr2g2197 2 27149669 27153882 Apr3g1354 3 28049576 28052928 PCT