Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1349 ATGGCTTCTGGTAGTTCTAGATTTGTGAGATTTCAAGATGATCCTGAATTAGTGAAAATGTCAATAACTAATGTTGACAATGGAATCAAGCCAAATGGAACACAATTAGCTGAGAATAGTGGCAAAAAGGCTCAGAAGGAGACAAGGAAGACAAGGAAGTTCTTGAAAGCAAGAGTATTGTCAAGAGTGTTCTCAGAGGACTATGATAGAGTTAGAAGAAGAATATTAGATCCCAGGGGACAAACCATTCACCGTTGGAACAAGATTTTCTTGGTAGCATGTTTAGTTTCTTTGTTTGTGGACCCTCTATTCTTTTATTTGCCACTAGTTAGAGATGAAGTGTGCATTGATATTGGAACAGCACTTGAAGTTTTCCTCACACTTATAAGATCAATAGCAGATGTGTTTTACATGATTCAGATTCTCATGAGGTTTAGAACAGCTTATGTTGCTCCTTCTTCTCGGGTATTTGGGAGAGGAGAACTTGTTATAGACTCTTCTAAGATAGCAGCTAGGTACTTGAGCAAGGGTTTTTGGTTAGACTTCATTGCTGCATTGCCTCTTCCTCAGGTGTTAATTTGGATTGTGATCCCCAATCTTGGAGGTTCTACCATGGCAAACACCAAAAATGTCCTTCGGTTTATCATCATTTTCCAGTATTTGCCGAGGCTATTTCTGATTTTTCCACTTTCATCTCAAATTGTAAAAGCTACAGGGGTTGTGACAGAAACAGCATGGGCAGGGGCAGCTTACAACTTGATGCTGTACATGTTGGCTAGCCATCTTTTAGGAGCTAGCTGGTACCTTCTATCAATTGAACGGCAAGAAGCATGCTGGAGGAGTGTTTGCGATCTGGAGTCAACTTGTCAATATGGATTCTTTGACTGCAAAAGGGTTAAAGATTCCCTCAGAATCTCCTGGTTCATAGCAAGTAATGTCACAAATTTATGCTCACCAAACATTAACTTTTATCAGTTTGGTATATATGGTGATGCTGTGACATCCGAAGTTACAACCTCGGCATTCTTTAATAAGTACTTCTTTTGTCTGTGGTGGGGCCTAAGGAATCTCAGTTCTTTGGGACAAGGTCTTCTCACTAGCACTTTCGTTGGAGAAATAATGTTCGCCATTGTTGTAGCAACCCTTGGATTGGTTCTTTTTGCTTTGCTGATTGGTAATATGCAGACATACCTGCAATCAACAACTGTCCGCCTAGAAGAATGGAGGGTCAGAAGAACTGATACAGAGCAATGGATGCATCACAGGCAGTTACCCACAGAATTAAGACAATCTGTGCGTAAATATGATCAATATAAATGGCTTGCCACACGAGGGGTAGATGAAGAAACTCTTCTCAAAGGACTTCCAGCTGATCTTAGGAGAGACATCAAACGCCACCTTTGTCTCGAGCTAGTTCGACGAGTTCCATTGTTTGATCAAATGGATGAGAGGATGCTAGATGCAATATGCGAAAGGCTGAAGCCAGCATTGTGCACAGAGAGCACATACCTAGTTCGAGAGGGTGATCCAGTGAATGAAATGCTCTTCATAATAAGAGGGCATCTTGATTCATACACCACCAACGGAGGCCGCACCGGTTTCTTCAACTCATGCCGTATTGGGCCAGGTGATTTCTGTGGTGAGGAACTGTTAACATGGGCATTGGATCCAAGACCAAGTGTGACACTTCCCTCTTCCACTAGAACAGTTAAGGCCATCTCAGAAGTAGAGGCCTTTGCACTCATAGCAGAAGACTTAAAGTTCGTTGCATCACAGTTCAGAAGGCTACACAGTAAACAACTAAGGCACAAGTTCAGGTTTTACTCACACCAATGGAGAACGTGGGCTGCATGTTTCATACAAGCTGCATGGAGACGCTATAAGAAAAGAAAGGATGCTGCTCAACTTAGAGCCAAAGAGAATAACAATAATAATAATATTCTCTCAGTTGCTGAGGTTGAAACACCAACATGTAGATCTGCATTAGTTGTGTATGCCACTAAGAGCACTACTAGGAAGGGTATGAATATGCATTCTGGAACAGGTTCTGGAGTTGTTAACTCTTTGAGGAAGCCAGAAGAACCAGACTTTTCTGTTGATGAGTAA 2106 0.4169 MASGSSRFVRFQDDPELVKMSITNVDNGIKPNGTQLAENSGKKAQKETRKTRKFLKARVLSRVFSEDYDRVRRRILDPRGQTIHRWNKIFLVACLVSLFVDPLFFYLPLVRDEVCIDIGTALEVFLTLIRSIADVFYMIQILMRFRTAYVAPSSRVFGRGELVIDSSKIAARYLSKGFWLDFIAALPLPQVLIWIVIPNLGGSTMANTKNVLRFIIIFQYLPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHLLGASWYLLSIERQEACWRSVCDLESTCQYGFFDCKRVKDSLRISWFIASNVTNLCSPNINFYQFGIYGDAVTSEVTTSAFFNKYFFCLWWGLRNLSSLGQGLLTSTFVGEIMFAIVVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVRRTDTEQWMHHRQLPTELRQSVRKYDQYKWLATRGVDEETLLKGLPADLRRDIKRHLCLELVRRVPLFDQMDERMLDAICERLKPALCTESTYLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVTLPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRYKKRKDAAQLRAKENNNNNNILSVAEVETPTCRSALVVYATKSTTRKGMNMHSGTGSGVVNSLRKPEEPDFSVDE* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1349 701 SUPERFAMILY cAMP-binding domain-like 407 603 IPR018490 -
Apr3g1349 701 Gene3D Helix hairpin bin 404 468 - -
Apr3g1349 701 ProSiteProfiles cAMP/cGMP binding motif profile. 477 560 IPR000595 -
Apr3g1349 701 PRINTS EAG/ELK/ERG potassium channel family signature 141 150 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr3g1349 701 PRINTS EAG/ELK/ERG potassium channel family signature 258 268 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr3g1349 701 PRINTS EAG/ELK/ERG potassium channel family signature 346 363 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr3g1349 701 PRINTS EAG/ELK/ERG potassium channel family signature 372 383 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr3g1349 701 PRINTS EAG/ELK/ERG potassium channel family signature 390 399 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr3g1349 701 PRINTS EAG/ELK/ERG potassium channel family signature 440 447 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr3g1349 701 Gene3D Jelly Rolls 475 595 IPR014710 -
Apr3g1349 701 Gene3D - 88 401 - -
Apr3g1349 701 Pfam Ion transport protein 86 404 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Apr3g1349 701 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 11 701 - -
Apr3g1349 701 MobiDBLite consensus disorder prediction 673 701 - -
Apr3g1349 701 ProSiteProfiles IQ motif profile. 613 642 IPR000048 GO:0005515
Apr3g1349 701 PANTHER - 11 701 - -
Apr3g1349 701 SMART cnmp_10 477 608 IPR000595 -
Apr3g1349 701 CDD CAP_ED 477 608 IPR000595 -
Apr3g1349 701 SUPERFAMILY Voltage-gated potassium channels 77 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1349 Apr-Chr3 28001165 28005324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1349 53 700 Ion Channels AT2G28260 76.733 0.0 1027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1349 K05391 - gmx:100791992 1196.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1349 3 28001165 28005324 Apr3g1349 3 28001165 28005324 ECH
Apr2g2192 2 27093220 27096867 Apr3g1349 3 28001165 28005324 PCT