Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1347 ATGAAGTCGCAGCTCAAAATTGCTCTTGCTTTTGTTATTAGCTTGCTCTTTATTCAACACTCATTTTGTGATGAACCTTCTGATACATCTAGCCAAAACAAGTGGAAATGCAGATGTTCTTTCCAAGGGAACCAGAGCTACTCTCTCGCAAATTGTTCAAAGTCATGTGATTGCCACTCAGATGCTGAAGAGAGTGCATCAGCATGGACATGCATATGTGATCCTAATGGGTTTCCCCAAGTCGCAGCAGATGGCCATAGCCCTAATTGCTTTAATGCTTGCAACTGCACCTGGGGAACTGTCACCATGCCGGGAGGTTCAAAGAAACATGTTTCCAGCAAGATTGTTGTTGTCATTCTATTGATATGTGTTATATGCACAACCATGGCATTTCTTATCTCGGTTATATGCTATGTCTACCGAAGGGACAGATGTGCTATTCAACCACCAGTATTCTCATCGGATAAGGAAATGAGTAGTGGTAGTACGGCCAACTTAATCAGTCATAGGTCAGGGGCTTCTTCAGTGCCAGAAACAAAATTTACTATACATTCTCCTATTTTTCATATTACAGGATGCTTTAGGAAAGCCTCTTTCTTGTTTGGGAGCCAAAAAGAAACTTTTCATGGAAATATTATTCAGTTTTCATTAGCTGAACTGGAAAATGCCACTGAAAACTTTTCAGCTTCCAACCTAATAGGACTGGGAGGAAGTAGTTATGTATACCATGGTCGGCTGAAAGATGGTAGCAATGTGGCAGTTAAGCGATTAAAAGATGAAGGAGTGCCAGATGCAGACTCTGCATTTTTCAAGGAGATTGAACTATTATCTCGACTTCATCATTGTCATTTGGTGCCTTTGCTTGGATACTGCTCGGAGTTAAAGGGAAAACATGTTCAGAGGTTACTAGTATTTGAGTATATGTCTAATGGAAATTTAAGGGACTGCTTAGATGGAGCTTCTGGAAAACATATGGATTGGGCCACTCGTGTTACGATTGCAATAGGAGCTGCAAGAGGATTGGAGTATCTCCATGAAGCAGCTGCTCCAAGAATTCTTCATAGAGATGTCAAGTCAACTAACATTCTTCTGGATGAAAATTGGCAAGCGAAAATAACTGATCTTGGTATGGCTAAAAACTTGAGATCTGATGACCTCCCCAGCTGTTCAAATTCTCCAGCAAGAATGCAGGGAACATTTGGCTATTTTGCACCTGAGTATGCCATTGTTGGTAGAGCTTCTCTTGAGTCAGATGTCTTTAGTTTTGGGGTGGTCCTTCTTGAGCTTATCAGTGGTCGGCAACCCATCCACAAATCCACAGGCAAAGAAGAAAGCCTCGTTATATGGGCTACTCCTCGCTTACAGGATAGTGGGCGAGTGATAGCAGAGTTGGTTGATCCACAATTGAAAGGAAACTTCCCAGAAGAAGAGGTGCAGGTTATGGCATACTTAGCAAAGGAGTGTTTGCTGCTGGATCCTGACACTAGACCAACCATGAGTGAGGCTGTTCAGATTCTTTCAAGTATTTCCCCAGGCAAATCTAGAAGGAGAAGAAACATTCCAGCAAACCTCCTTCAGGAACTAGAGGATGCTGCTGAAAAGCAAAAGAAAACTCTATCCAATAACTTTCCAATTCATAGCTCATTGCCACAAGATACTGATCAAAATCTTAGTGTTGTGCACAAAAATAAAGAAGCGGATGCAGTTTCAGCTGAATATATGGAGAGTTTGATCCTCTTGACTTCTAAATCTGATAGCAGGCATGCATCAGAAGAGGAAATGGTAGACCTAACTGAGCCTAGGTTTGAATCATTTTGCATCACAAATGGCAAGGTCCCTTGA 1842 0.4175 MKSQLKIALAFVISLLFIQHSFCDEPSDTSSQNKWKCRCSFQGNQSYSLANCSKSCDCHSDAEESASAWTCICDPNGFPQVAADGHSPNCFNACNCTWGTVTMPGGSKKHVSSKIVVVILLICVICTTMAFLISVICYVYRRDRCAIQPPVFSSDKEMSSGSTANLISHRSGASSVPETKFTIHSPIFHITGCFRKASFLFGSQKETFHGNIIQFSLAELENATENFSASNLIGLGGSSYVYHGRLKDGSNVAVKRLKDEGVPDADSAFFKEIELLSRLHHCHLVPLLGYCSELKGKHVQRLLVFEYMSNGNLRDCLDGASGKHMDWATRVTIAIGAARGLEYLHEAAAPRILHRDVKSTNILLDENWQAKITDLGMAKNLRSDDLPSCSNSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIHKSTGKEESLVIWATPRLQDSGRVIAELVDPQLKGNFPEEEVQVMAYLAKECLLLDPDTRPTMSEAVQILSSISPGKSRRRRNIPANLLQELEDAAEKQKKTLSNNFPIHSSLPQDTDQNLSVVHKNKEADAVSAEYMESLILLTSKSDSRHASEEEMVDLTEPRFESFCITNGKVP* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1347 613 ProSiteProfiles Protein kinase domain profile. 227 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1347 613 Gene3D Transferase(Phosphotransferase) domain 1 308 534 - -
Apr3g1347 613 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 2 607 - -
Apr3g1347 613 Pfam Protein kinase domain 229 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1347 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672|GO:0006468
Apr3g1347 613 PANTHER OS01G0253100 PROTEIN 2 607 IPR045271 GO:0004714|GO:0006468
Apr3g1347 613 Coils Coil 522 542 - -
Apr3g1347 613 ProSitePatterns Protein kinases ATP-binding region signature. 233 255 IPR017441 GO:0005524
Apr3g1347 613 CDD STKc_IRAK 233 509 - -
Apr3g1347 613 SMART serkin_6 227 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1347 613 Gene3D Phosphorylase Kinase; domain 1 201 307 - -
Apr3g1347 613 SUPERFAMILY Protein kinase-like (PK-like) 208 506 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1347 Apr-Chr3 27975372 27981941 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1347 1 611 Receptor kinase-like Gene Family AT2G28250 52.033 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Apr3g1347 Pkinase 2.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1347 - - gmx:100817870 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1347 3 27975372 27981941 Apr3g1347 3 27975372 27981941 ECH
Apr2g2191 2 27084788 27090080 Apr3g1347 3 27975372 27981941 PCT