Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1341 ATGAGCAGCTTAAGGCCTGAATTGCATGTGGCACAACAAATTCGGCGCGATAAACTGAGGATTCAAAACAGTTCACAACATTTTCAAGAGTTCCCTAACAATCTAGAGCAGTTAACATTACACCCCGGGTTTAACTTGGATCTTCTTCCAGTAAGGAATAACGTTCGAAATGGCAACATGCTTGACGCGGAAGAAGCGCTTTATCCATCGGAAATGATAAGTTTCTCCACTGCTTCGAATCCTCTATCTGCTCCTAGAAACCCATTGGAGTGTACTCAAGAGCTAATGATGGCTCAGTATGGTTCCTTTCCTCATTCATCTGCAAAGGAACAATGCGAACCGCGCAATAACTTGGGTAATTGGAGAAACAGTGCCCCTCATCAAGTGAGTGATTGGATGGTGAATTATAATGAAAGCAATCCCAACTCTTTCTTGACTTCTGAGCTCAATAATAACCGAGAAATTCAGAAGCAGTTAGGGGAAATGCATTATACTCCTTCATCATCTTCTCCACTTTATCATAATGCTTTGCAGGATATGGCTTCGTTGATGCACGATGGAGTTTGGGGAGGGAATCATGGTGAGCCTGTGGTTCATCCAAGCTTTGGACATCAAGCAAATAGTGAGTTTCGTTTTGGGAGTGCTAATTTGTGGACAAATAGTTCAATGGGCTTCACCGACAAAAAGGTAGTTAATGAACAAGACACCAACCCGCAGGGCCTATCTTTGTCACTCTCATCAAACTCTCAATCCAAGCCTTCTTTTGAAGAAGGGTCTGCATCAGATGATCCACAGTATTCAAAGTCTGTGAAAACTACAATGAAGCCGAATGTGAATATTCCTCGAAGTTGTGGAAAATCACTTCAAGATTCAATGGTAATGCCTTTAAATAACAGTGCTACTTATCGAAATGTTGGACCCCTTGGTCCTTTTACTGGGTATGCCACGATTTTGAAGAGTTCAAAGTTCATGAAGCCTTGCCAACAGCTGTTAGATCAATGGTGCTGTCACAATGGTTCAAAATTTACAAAAGGAGGAGCTTGTGATGTTGTTCCGGAGTGGGTCTCTCGAGATGTCAGTGCTGCTTCTACTTCTGCTGCTGATGCTGTTAGTGTTGATGAAAGTGGGGTTGCTGCAAAAGGTGTTGGCATCTCAGGTGCTTCATCGTCTGTGTTGTATAGTTCAAACGAAAATAGCGCTGATGGCGGAGCCGCGAGTAGCTTTTGTCTTTCTTCTCGACCTGCGTGTCAAAAGAATAAGGCAAAACTACTGTACATGCAAGAGGAGGTTACCAGGAGATATAAGCAGTACCATCAACAAATGCAAATGGTTGTTCAATCCTTTGAGTCAGTAGCGGGTCTTAGTTCGGCTACACCTTACATCTCCTTGGCTCTCAAGTCAGTATCAAAAAACTTCAGGTGTCTAAAAAGTGCTATCTCAGATCAACTAAAGCTTACATGTGAAGTTTTGGGAGAGGACTTCTCACTACCAACTACAAGTACTAGTAATAAATTTGACACTAATATGGCAAGGCTAAGGTACATGGACCAAAGTTTTCAAAAAAACAAATCTGGGGGGCCTAACGTAGACTTTCTTGAGCCCCAACAACACGTTTGGAGGCCCCAGAGAGGCTTACCAGAACGCTCAGTGGCAATTCTGAAGGCTTGGTTATTTGAGCATTTCCTTCATCCGTACCCCACGGACACTGATAAACACATGTTGGCTACCCAAACAGGTCTATCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTCCGTGTTTGGAAGCCAATGGTTGAGGAAATACACATGCTTGAAACAAAAGGCGCAGCAGAAGCCCACCAAAACACTAGCAAAAATAATGATCAGGTAGCTTCAGCCTCTGAAGGTAGCAACCAGCCCAAAGTTGATCACCAACCTGTGAACAAGTTTGGTACACATGCACATGCACGTGCAATCGCTGAAAAGCAATTCCAGTGTTTGGAAATGGGATCATCTTCTTCAGCTGGCAATGAGGAAAACATTGGAATGGATGGAGAACAATGGAATGAAGAGAAGCGTTCTAAATTGGAATGTCAAATTAATACTACACCAAGCTTGGATGGGACAGTTATGGGTTTTATGCCATATAGACGTGGTGGGCTTGAGGTTGGGGGAATTGGGTCCGTGTCACTAACTTTGGGTCTTAGGCATGGTGTTGAGGGTGTGCAACAACAACAATTACATCAAGAAGACGAGCTTAGGCGTCAATTTGGAGGGCACATGATCCGTGACTTTGTCGGCTGA 2292 0.4346 MSSLRPELHVAQQIRRDKLRIQNSSQHFQEFPNNLEQLTLHPGFNLDLLPVRNNVRNGNMLDAEEALYPSEMISFSTASNPLSAPRNPLECTQELMMAQYGSFPHSSAKEQCEPRNNLGNWRNSAPHQVSDWMVNYNESNPNSFLTSELNNNREIQKQLGEMHYTPSSSSPLYHNALQDMASLMHDGVWGGNHGEPVVHPSFGHQANSEFRFGSANLWTNSSMGFTDKKVVNEQDTNPQGLSLSLSSNSQSKPSFEEGSASDDPQYSKSVKTTMKPNVNIPRSCGKSLQDSMVMPLNNSATYRNVGPLGPFTGYATILKSSKFMKPCQQLLDQWCCHNGSKFTKGGACDVVPEWVSRDVSAASTSAADAVSVDESGVAAKGVGISGASSSVLYSSNENSADGGAASSFCLSSRPACQKNKAKLLYMQEEVTRRYKQYHQQMQMVVQSFESVAGLSSATPYISLALKSVSKNFRCLKSAISDQLKLTCEVLGEDFSLPTTSTSNKFDTNMARLRYMDQSFQKNKSGGPNVDFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGAAEAHQNTSKNNDQVASASEGSNQPKVDHQPVNKFGTHAHARAIAEKQFQCLEMGSSSSAGNEENIGMDGEQWNEEKRSKLECQINTTPSLDGTVMGFMPYRRGGLEVGGIGSVSLTLGLRHGVEGVQQQQLHQEDELRRQFGGHMIRDFVG* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1341 763 Pfam Associated with HOX 317 480 IPR006563 -
Apr3g1341 763 MobiDBLite consensus disorder prediction 235 284 - -
Apr3g1341 763 SUPERFAMILY Homeodomain-like 541 605 IPR009057 -
Apr3g1341 763 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 31 735 - -
Apr3g1341 763 MobiDBLite consensus disorder prediction 612 643 - -
Apr3g1341 763 SMART HOX_1 539 603 IPR001356 GO:0003677
Apr3g1341 763 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 735 - -
Apr3g1341 763 SMART prehox3 312 481 IPR006563 -
Apr3g1341 763 MobiDBLite consensus disorder prediction 613 641 - -
Apr3g1341 763 Pfam Homeobox KN domain 556 595 IPR008422 GO:0003677|GO:0006355
Apr3g1341 763 ProSiteProfiles 'Homeobox' domain profile. 536 599 IPR001356 GO:0003677
Apr3g1341 763 Gene3D - 542 604 - -
Apr3g1341 763 CDD homeodomain 539 600 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1341 Apr-Chr3 27875800 27882490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1341 411 608 Homeobox Transcription Factor Family AT4G34610 55.051 7.12e-65 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Apr3g1341 POX 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1341 - - gmx:100793050 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1341 3 27875800 27882490 Apr3g1341 3 27875800 27882490 ECH
Apr2g2186 2 27006036 27011343 Apr3g1341 3 27875800 27882490 PCT