Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1338 ATGAGTTCAGAAAGTGCAAGCCAAAACCAATCAAAACCCATGAATTCTGAGACCCCTCTTTCACTTAAACCCATTAACACAAAGCTAAAGCCTTGGAGATCAAGAGGCAACAAGGATCGTCACACGAAGGTGAATGGAAGAGAACGGCGTGTTCTGTTGTCACCACTGTGTGCCGCACGTGTCTTCCAACTCACTGGTGAGCTTGGTCACAAGACTCATGGAGAAACCATTGGGTGGCTCTTACGCCAAGCTGAACCTTCCATTGTTGCTGCCACCGGCTCTGGGGTGTCATCATCCATGGTTGCATCTGCATCTGCATCAGCATCTTCTGAGGACAAAAATAATGTTCAAGATGTGGATTCGGTTCCCATGTCAGCAGGTAATGGCGTCAAGTCTGAAGAAGCCATTCTACCGTTTGAGTTTGATTTGCTAAACAACTTTGATGCCGAGTTTTCTGATAATGATATGGCAATGCTTCAATCATTCATGACAAGGTTGGCTTAA 504 0.4563 MSSESASQNQSKPMNSETPLSLKPINTKLKPWRSRGNKDRHTKVNGRERRVLLSPLCAARVFQLTGELGHKTHGETIGWLLRQAEPSIVAATGSGVSSSMVASASASASSEDKNNVQDVDSVPMSAGNGVKSEEAILPFEFDLLNNFDAEFSDNDMAMLQSFMTRLA* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1338 167 PANTHER TRANSCRIPTION FACTOR PCF1-LIKE 6 164 - -
Apr3g1338 167 ProSiteProfiles TCP domain profile. 37 91 IPR017887 -
Apr3g1338 167 MobiDBLite consensus disorder prediction 1 44 - -
Apr3g1338 167 MobiDBLite consensus disorder prediction 1 23 - -
Apr3g1338 167 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 6 164 IPR005333 GO:0003700
Apr3g1338 167 Pfam TCP family transcription factor 36 115 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1338 Apr-Chr3 27848737 27849240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1338 24 110 TCP Transcription Factor Family AT5G08330 58.621 6.58e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Apr3g1338 TCP 5.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1338 - K16221 var:108322003 160.229