Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1333 ATGGCTGATATTGAGGGTTCTCCGGGAAGCTCCATGCATGGAGTAACTGGCAGAGAACAAACCTTCATATCCTCAGTTGCTTCCCCAATGGTCCCAACTGACACCACAGCCAATTTTGCTTTGCCAGTTGATTCAGAACACAAAGCCAAGGTTTTCAAACTCTTCTCCTTAGCCAACCCTCACATGAGAACCTTCCACTTGTCTTGGATATCCTTCTTCACTTGCTTTGTCTCAACCTTCGCTGCAGCCCCTCTTGTCCCCATCATTCGCGAGAACCTTAACCTCACAAAAAGTGACATTGGTAATGCTGGTGTTGCTTCTGTTTCAGGCAGCATCTTCTCTAGGCTCACAATGGGTGCAGTTTGTGACCTATTAGGCCCACGTTACGGCTGTGCCTTCCTTATTATGCTGTCTGCTCCAACAGTGTTTTGCATGTCGTTTGTCAACGATGCTGCAGGATACATAGCAGTGAGGTTCATGATTGGGTTTTCTTTGGCCACTTTTGTTTCATGCCAATTTTGGATGAGCACCATGTTTAATAGTAAGATTATAGGGCTTGCGAATGGAACTGCTGCTGGTTGGGGAAACATGGGTGGTGGAGCCACTCAACTCATAATGCCATTGGTGTATGAGTTGATTAGAAGAGCTGGGGCTACTCCCTTTACGGCATGGAGGATTTCCTTCTTCATACCTGGTTGGCTTCATGTGATCATGGGGATCCTGGTCTTAACCCTAGGCCAAGATTTACCTGATGGCAACCTTGCTACCTTGCAGAAAAAGGGTAATGTTGCCAAAGATAAATTCGCCAAGGTGTTATGGTACGCGGTAACAAATTACAGGACATGGATTTTCGCCCTCCTCTATGGGTACTCCATGGGAGTTGAACTAACCACTGACAATGTCATTGCTGAGTATTTCTATGACAGGTTTAATCTCAAGCTGCACACCGCTGGAATAATTGCTGCTTCATTTGGAATGGCAAACATAGTGGCTCGACCCTTTGGTGGATATGCTTCTGATTATGCAGCCAGGTTGTTTGGCATGAGAGGGAGGCTCTGGACCCTATGGATCCTCCAAACCTTAGGAGGGGCTTTCTGCATATGGCTTGGGCGAGCTAACTCACTTCCAATTGCTGTTTTGGCTATGATCCTCTTCTCTATTGGAGCACAAGCTGCTTGTGGTGCAACTTTTGGTATCATTCCTTTCATCTCAAGGAGGTCTTTGGGGATCATATCAGGCCTAACTGGTGCAGGTGGAAACTTTGGATCTGGTTTGACCCAGTTGATCTTCTTTTCAACCTCCAAATTTTCTACATCCACAGGTCTCTCCTTGATGGGTGTCATGATTGTGTGTTGCACTCTTCCTGTGACACTTGTTCACTTCCCACAGTGGGGTAGCATGTTCCTCCCTCCTTCAAAAGACGTTAACAAATCCACTGAAGAACACTATTACACTTCTGAATGGAATGAGGAAGAGAAGCAGAAGGGCTTGCATCAGAACAGCCTCAAGTTTGCTGAAAATAGCCGCTCTGAGAGAGGCAAGCGTGTGGCCTCTGCCCCAACACCCCCAAATACTACTCCAACCCATGTCTAG 1593 0.467 MADIEGSPGSSMHGVTGREQTFISSVASPMVPTDTTANFALPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRENLNLTKSDIGNAGVASVSGSIFSRLTMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVNDAAGYIAVRFMIGFSLATFVSCQFWMSTMFNSKIIGLANGTAAGWGNMGGGATQLIMPLVYELIRRAGATPFTAWRISFFIPGWLHVIMGILVLTLGQDLPDGNLATLQKKGNVAKDKFAKVLWYAVTNYRTWIFALLYGYSMGVELTTDNVIAEYFYDRFNLKLHTAGIIAASFGMANIVARPFGGYASDYAARLFGMRGRLWTLWILQTLGGAFCIWLGRANSLPIAVLAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLIFFSTSKFSTSTGLSLMGVMIVCCTLPVTLVHFPQWGSMFLPPSKDVNKSTEEHYYTSEWNEEEKQKGLHQNSLKFAENSRSERGKRVASAPTPPNTTPTHV* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1333 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
Apr3g1333 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Apr3g1333 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 1 527 - -
Apr3g1333 530 Gene3D MFS general substrate transporter like domains 264 466 IPR036259 -
Apr3g1333 530 SUPERFAMILY MFS general substrate transporter 59 460 IPR036259 -
Apr3g1333 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 527 IPR044772 GO:0015112
Apr3g1333 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Apr3g1333 530 Gene3D MFS general substrate transporter like domains 58 254 IPR036259 -
Apr3g1333 530 MobiDBLite consensus disorder prediction 490 513 - -
Apr3g1333 530 MobiDBLite consensus disorder prediction 490 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1333 Apr-Chr3 27765569 27767718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1333 1 530 Inorganic Solute Cotransporters AT1G08090 80.943 0.0 905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1333 K02575 - gmx:100807710 1001.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1333 3 27765569 27767718 Apr3g1333 3 27765569 27767718 ECH
Apr2g2179 2 26904643 26906741 Apr3g1333 3 27765569 27767718 PCT