Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1324 ATGGGAAGAGCTCCTTGTTGTGACAAAGCAAGTGTTAAGAAAGGGCCATGGTCGCCAGAAGAAGACTCAAAGCTGAAGGAGTACATAGACAAGCATGGAACTGGAGGGAATTGGATTGCTCTTCCTCAAAAAGCTGGTCTCAAGAGATGTGGGAAAAGTTGCAGATTGAGATGGCTCAACTATCTCAGGCCCAACATTAAGCATGGAGATTTCTCTGATGAGGAAGACAGAATAATTTGCAGCCTCTATGTTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTGCCAGGCAGGACTGACAATGATATCAAGAATTATTGGAACACTAAGTTAAAGAAAAAGCTCATGGGTTTGCTTCCTCTATCTCATCACAGTAAACAACCTCAATTTCCATCTTCTTCCCTTCAAAACCCCCCACTCTCTCCTTCTCACCAACTCTATGGAGATTACTGCCCAATAACAACCTCATCTTTCTCATGTATTGAACCCCTTTCACTCCCTTCAAGTAACTATGCTAGCACAAGCTGCACAACCACCTCGGGTTCTCTCCCCTTTTACCAAAACCAAGAGTCCATGGTTAGTATTAGTCCCATGCAATGTTACTACCCTATTAGAGACAACATGCTCATGTTTGGAAGTGAAGGAAGTTGCAGTTCCTCTGATGGTAGCTGCACTCAAGGAAGAGAAATCAAGCAAGAAGAAATGGGTTATCAGAGCTATAATGACAATAACTTTATGCTTAGTTACAATAGCATTAATGATGGCGGTGAAAATGTTAACCAATATGGAGAAAAGTTGGGTGTTGGAGGGTGCTTTGACCACAATTTAACACCGTTGGATTGTGATCTGGAGGATATCAAGCAATTGATTAGTAGTAGCAGCTTTAATAATCTTGATGAAAACAAGACAAGGGAGAAGGGCATGTACTACTACTACTACTGA 948 0.4167 MGRAPCCDKASVKKGPWSPEEDSKLKEYIDKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPLSHHSKQPQFPSSSLQNPPLSPSHQLYGDYCPITTSSFSCIEPLSLPSSNYASTSCTTTSGSLPFYQNQESMVSISPMQCYYPIRDNMLMFGSEGSCSSSDGSCTQGREIKQEEMGYQSYNDNNFMLSYNSINDGGENVNQYGEKLGVGGCFDHNLTPLDCDLEDIKQLISSSSFNNLDENKTREKGMYYYYY* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1324 315 Gene3D - 70 138 - -
Apr3g1324 315 Gene3D - 7 68 - -
Apr3g1324 315 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Apr3g1324 315 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Apr3g1324 315 CDD SANT 71 111 IPR001005 -
Apr3g1324 315 CDD SANT 16 62 IPR001005 -
Apr3g1324 315 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Apr3g1324 315 PANTHER TRANSCRIPTION FACTOR RAX3 1 303 - -
Apr3g1324 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Apr3g1324 315 PANTHER OS09G0431300 PROTEIN 1 303 - -
Apr3g1324 315 SMART sant 67 115 IPR001005 -
Apr3g1324 315 SMART sant 13 64 IPR001005 -
Apr3g1324 315 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Apr3g1324 315 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Apr3g1324 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1324 Apr-Chr3 27687409 27688950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1324 1 119 MYB Transcription Factor Family AT5G57620 90.756 1.43e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr3g1324 Myb_DNA-binding 2.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1324 K09422 - gmx:100779919 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1324 3 27687409 27688950 Apr3g1324 3 27687409 27688950 ECH
Apr2g2171 2 26834199 26835779 Apr3g1324 3 27687409 27688950 PCT