Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1315 ATGCTCCCACTGCATCTACGACCATGCTTCTCTCTTCCCTTCTTTCGCCCCATCACAGTTATTAGGGTTTCCTCTCTCTTCTCTCTTTCTCTCTGTTTCACCCCTCACCGCGCCATGTCCAAACCACCCTCTGCTTTCGACGCTCTCATGTCCGGCGCACGCGCCGCCGCCAAGAAAAAATCCCCACAACAACCACAACCACCTTCCTCATCCCCTAAGAAAAGAAAATCTCCACACTCCACTTCTACTCAAAACCCTAACAGCCTCAAAACCCCCCTTTCTTCTTCCCCCATTGAAACCGTTCAACAACCTAACAAACAGCATGAAACCGCCGAGCCGGAACACAAGATTCGCCACGTGTCATCTTCTCAGGAGATTGTCGCGGAGCTGAAGAAACGAGTTCCGCAGCTGAAGAAGAAGCCTTCGGAGTTCGATCCAGCTTCGGTGGCTTGCTGGGAGAAGGAGAAACCTGTGCCGTTTCTCTTCCTCTGCTTGGCCTTTGACATGATTGCTGAGGAAACAGGAAGGATTGTTATCACTGACATTGTTTGCAATCTGTTGAGGACCGTCATACATGCCACGCCGGAGGACCTCGTTCCCGTCGTTTACCTATCCGCCAATCGCATTGCTCCGGCGCATGAAGGGCTGGAATTGGGAATTGGCGATGCCTCTATTATCAAGGCGCTCGCCGAGGCGTGTGGAAGGACTGAGTCGCAGATTAAGAATCAGTATAAGGAAAAGGGTGATTTAGGGTTAGTGGCCAAAGCGAGCCGTTCCTCTCAGTCTATGATGCGTAAGCCTGATGCATTGACTATTAGGAAGGTTTTCAACACTTTCCGCCTTATTGCCAAGGAATCTGGAAAAGATAGTCAAGAGAAGAAAAAGAATCATATCAAGGCACTTCTTGTGGCTGCAACTGACTGTGAACCTCAGTATCTAATCCGTTTGCTACAGACAAAGTTGCGAATTGGGTATGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTATACACTGAAGAACACTCTAAACCACCTCCTGGAATTCAGTCTCCCTTAGAAGAGGCTTCAAAAATTGTCAAACAAGTGTATTCTGTTCTTCCTGACTATGACAAAATAGTATCTGCACTGCTTACGGATGGTCTATGGATGCTTCCAAAGACATGTAATTTTACTCCTGGTGTTCCAGTTGGACCTATGCTGTCAAAAGCAACAAAAGGGGTATCTGAAGTTCTAAATAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACATGGAGAATGGCTCAGTTGAGATTTACAGCAGAAATGCAGAACGAAACACAGGGAAGTTTCCTGATGTTGTTGCTGCAATTTCAAGGTTAAAGAAAACAACTGTATCATCATTTGTTCTTGATTGTGAACTTGTTGCGTATGATCGGGCAAAACAGAAGATCCTTCCTTTCCAGGTGCTTAGCACTCGGGCTCGGAAAAATGTATCTATGAGTGATATAAAGGTTGATGTTTGCGTATTTGCTTTTGATTTGTTGTATCTTAATGGCCAAGCACTTCTTCAGGAAAACCTGAAAGTCCGTAGAGAGCATCTCTATGCCTCTTTTGCGGAAGAATCTGGATTTCTTCAGTTTGCAACATCAATAACATCAAATGATGTCGAGGAAGTACAAAAATTTCTTGACAAAGCTGTTGATGCAAGTTGTGAGGGATTAATTATTAAGACATTAAATGAAGATGCTACATATGAACCTTCCAAGAGGTCACTCAACTGGCTAAAACTGAAGAAAGATTATATGGAAAATATAGGGGACTCACTAGATTTGGTACCTATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGGGTCTATGGTGCCTTCCTCCTTGCTTGCTATGACAGCAATAATGAAGAATTTCAAAGTATTTGTAAGATAGGAACGGGATTCTCTGAAGAAATGCTCGAAGAACGTTCTACTAGTCTTCAATCTAAAGTGATTCCCAAGCCAAAGGCATACTATCGATATGCAGAAACAATCAATCCTGATGTCTGGTTTGAAGCCAGTGAGGTGTGGGAGGTGAAAGCTGCAGACCTGACCATTAGCCCTGTTCACCGTGCTGCAGTGGGCATAGTAGATACGGACAAGGGCATATCTCTTCGGTTTCCACGTCTACTTCGAGTTCGGCTGGACAAAGCTCCTGAAGAGGCCTCATCATCTGAGCTGGTTGCTGAAATGTACAATGCTCAAAAACACAATCACACAAACAACCAAGATGACAATGAAGATGATTGA 2322 0.4479 MLPLHLRPCFSLPFFRPITVIRVSSLFSLSLCFTPHRAMSKPPSAFDALMSGARAAAKKKSPQQPQPPSSSPKKRKSPHSTSTQNPNSLKTPLSSSPIETVQQPNKQHETAEPEHKIRHVSSSQEIVAELKKRVPQLKKKPSEFDPASVACWEKEKPVPFLFLCLAFDMIAEETGRIVITDIVCNLLRTVIHATPEDLVPVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRTESQIKNQYKEKGDLGLVAKASRSSQSMMRKPDALTIRKVFNTFRLIAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPGIQSPLEEASKIVKQVYSVLPDYDKIVSALLTDGLWMLPKTCNFTPGVPVGPMLSKATKGVSEVLNKFQDVEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKFPDVVAAISRLKKTTVSSFVLDCELVAYDRAKQKILPFQVLSTRARKNVSMSDIKVDVCVFAFDLLYLNGQALLQENLKVRREHLYASFAEESGFLQFATSITSNDVEEVQKFLDKAVDASCEGLIIKTLNEDATYEPSKRSLNWLKLKKDYMENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEEMLEERSTSLQSKVIPKPKAYYRYAETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDTDKGISLRFPRLLRVRLDKAPEEASSSELVAEMYNAQKHNHTNNQDDNEDD* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1315 773 Gene3D - 411 609 - -
Apr3g1315 773 MobiDBLite consensus disorder prediction 73 107 - -
Apr3g1315 773 PANTHER DNA LIGASE 1 60 773 - -
Apr3g1315 773 Pfam DNA ligase N terminus 159 334 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Apr3g1315 773 Pfam ATP dependent DNA ligase C terminal region 630 741 IPR012309 GO:0003910|GO:0006281|GO:0006310
Apr3g1315 773 MobiDBLite consensus disorder prediction 743 773 - -
Apr3g1315 773 MobiDBLite consensus disorder prediction 53 122 - -
Apr3g1315 773 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 217 756 IPR000977 GO:0003910|GO:0005524|GO:0071897
Apr3g1315 773 MobiDBLite consensus disorder prediction 108 122 - -
Apr3g1315 773 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 141 391 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Apr3g1315 773 SUPERFAMILY Nucleic acid-binding proteins 613 759 IPR012340 -
Apr3g1315 773 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 60 773 - -
Apr3g1315 773 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 425 433 IPR016059 GO:0003909
Apr3g1315 773 Gene3D DNA ligase/mRNA capping enzyme 430 555 - -
Apr3g1315 773 Gene3D - 610 772 IPR012340 -
Apr3g1315 773 CDD OBF_DNA_ligase_I 613 758 - -
Apr3g1315 773 ProSiteProfiles ATP-dependent DNA ligase family profile. 507 643 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Apr3g1315 773 Gene3D - 134 403 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Apr3g1315 773 CDD Adenylation_DNA_ligase_I_Euk 390 608 - -
Apr3g1315 773 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 393 611 - -
Apr3g1315 773 ProSitePatterns ATP-dependent DNA ligase signature 2. 579 605 IPR016059 GO:0003909
Apr3g1315 773 Pfam ATP dependent DNA ligase domain 401 605 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1315 Apr-Chr3 27593441 27600776 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1315 12 773 Core DNA Replication Machinery Family AT1G08130 67.268 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1315 K10747 - gmx:100783155 1236.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1315 3 27593441 27600776 Apr3g1315 3 27593441 27600776 ECH