Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1313 ATGGAAACAACGGCAGAGGTTGTTTCATCTCATTCTCTAGTATCAGAGTCCTCTTCTATGGAACTTGGAATTCAGAATTTTGGCTGCATGCATTACAAGAGGAGATGCAAGATAAGGGCGCCTTGTTGTGATGAGGTTTTTGATTGTAGGCATTGCCATAATGAAGCCAAGAACTCTGAGGAGGTTAATTCTGCAGATCGTCATGATATCCCACGCCATGAAATTAAGAAGGTCATCTGCTCCTTATGTGATACCGAACAAGATGTTCAACAGTACTGCATAAATTGTGGAGTATGCTTGGGCAATTACTTTTGTGCTACATGCAAATTCTTCGATGATGATATTTCAAAGAACCAATACCATTGTGAGGAATGTGGCATCTGCAGAATTGGAGGCAAGGATAACTTTTTCCATTGCAAAAGATGTGGATGTTGCTACTCCAAGGTAATGGAAACGGGGCATCGTTGTGTAGAAGGCGCAATGCATCACAATTGCCCTGTTTGCTTTGAGTATTTGTTTGATACAGTAAGAGATATTACCGTCTTACCTTGCGGGCATACTATACATTTAGAGTGTGTTGAAGAAATGGAACGACATCATAGGTACTCATGTCCTGTTTGCTCAAAATCCATCTGTGACATGTCAAGTTTGTGGAAGAAGCTTGACGAAGTGATTGCCTCAACACCAATGCCAGAAACTTACAAAAACAAGATGGTATGGATACTTTGCAATGATTGTGGAGTAAACTCTCATGTACAATTCCACATTGTGGCCCATAAATGCTTAAGTTGCAACTCATACAATACTAGACAGATACAGGGAATACCTACTACATCATGCTCATCTAGGGTGACTGAAATGGTAAGATGA 870 0.4046 METTAEVVSSHSLVSESSSMELGIQNFGCMHYKRRCKIRAPCCDEVFDCRHCHNEAKNSEEVNSADRHDIPRHEIKKVICSLCDTEQDVQQYCINCGVCLGNYFCATCKFFDDDISKNQYHCEECGICRIGGKDNFFHCKRCGCCYSKVMETGHRCVEGAMHHNCPVCFEYLFDTVRDITVLPCGHTIHLECVEEMERHHRYSCPVCSKSICDMSSLWKKLDEVIASTPMPETYKNKMVWILCNDCGVNSHVQFHIVAHKCLSCNSYNTRQIQGIPTTSCSSRVTEMVR* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1313 289 Pfam RING-type zinc-finger 165 205 IPR027370 -
Apr3g1313 289 SUPERFAMILY RING/U-box 164 211 - -
Apr3g1313 289 SMART ring_2 165 207 IPR001841 -
Apr3g1313 289 ProSiteProfiles Zinc finger RING-type profile. 165 208 IPR001841 -
Apr3g1313 289 Gene3D - 236 278 - -
Apr3g1313 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 227 IPR013083 -
Apr3g1313 289 ProSiteProfiles Zinc finger CHY-type profile. 22 98 IPR008913 GO:0008270
Apr3g1313 289 Pfam CHY zinc finger 29 110 IPR008913 GO:0008270
Apr3g1313 289 SUPERFAMILY CHY zinc finger-like 26 99 IPR037274 GO:0008270
Apr3g1313 289 ProSiteProfiles Zinc finger CTCHY-type profile. 100 164 IPR017921 -
Apr3g1313 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 12 287 - -
Apr3g1313 289 SUPERFAMILY Zinc hairpin stack 101 158 IPR037275 -
Apr3g1313 289 Pfam Zinc-ribbon 212 270 IPR039512 -
Apr3g1313 289 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 12 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1313 Apr-Chr3 27580776 27583784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1313 25 273 C2H2 Transcription Factor Family AT3G18290 40.000 1.13e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1313 K10144 - gmx:100812709 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1313 3 27580776 27583784 Apr3g1313 3 27580776 27583784 ECH