Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1312 ATGGACAAAATGGATTTTGATCAGGAGACTCTGGTGCACATTAATGACTTCGAGCTACACAACTTTGTGGAAGATCCCAACTTAGATCAGTTTATCAATTTGATTCGTGGGGATAACAATGATACTATCTGTAACTTCAATTCCGAGCTTATCAATGACTGCTTCATTGACAACTCCATCCTCTCATATCCTTCAATCCCTTTTGATCAGTGCAAGAGTGATTCTGTTAATGTTTATGATCCAAGCTCTACTACACTTAGCTCCTTCTCTTGTTTTGATGGGGAAGCCAAGGGAGGAGAAGAAGAAAATGACATGGAGGATTCTTCTGCAATAACAATCACCACAACAGCAACTAAGAGTATTACTACTAAGCCAAGAAGAAAAACTGATAGGTCCATGACTTTGATTTCTGAGAGGAGGAGAAGAGGGAGAATGAAGGAGAAGCTTTATACATTGAGGTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCTATCATTGCAGGACTTGAAACATCCTTATTGATGTCCAAAAATTATCAAGGATCAGGAGAAAATCCCATTAACTTTCAATTCACCAACAACAGCCTTTCAATCTGCAACTGCAAGAAGATCATCCAGATGGACATGTTTCAAGTGGATGAAAGAGGGTTTTATGTGAAAATAGTATCCAGTAAAGGAGAAGGTGTGGCAGCCTCATTGTACAGGTCTCTTGAATCTCTGACTGGCTTCAATGTTCAGAACTCAAATTTGGCCACTCTTCGTGATAGTTTCCAACTTACATTTTCATTGAATGCAAAAGGCTCTGAGCCAGAAATTAACCTGCCCAACTTGAAGCTAAGGGTGACTGGAGCTTTTATGAACCAAGGCTTTGAATTCATACCTTTTTTTCATGCTTGA 903 0.3942 MDKMDFDQETLVHINDFELHNFVEDPNLDQFINLIRGDNNDTICNFNSELINDCFIDNSILSYPSIPFDQCKSDSVNVYDPSSTTLSSFSCFDGEAKGGEEENDMEDSSAITITTTATKSITTKPRRKTDRSMTLISERRRRGRMKEKLYTLRSLVPNITKMDKASIIAGLETSLLMSKNYQGSGENPINFQFTNNSLSICNCKKIIQMDMFQVDERGFYVKIVSSKGEGVAASLYRSLESLTGFNVQNSNLATLRDSFQLTFSLNAKGSEPEINLPNLKLRVTGAFMNQGFEFIPFFHA* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1312 300 Pfam Helix-loop-helix DNA-binding domain 136 168 IPR011598 GO:0046983
Apr3g1312 300 Gene3D - 119 171 IPR036638 GO:0046983
Apr3g1312 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Apr3g1312 300 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 168 - -
Apr3g1312 300 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 168 296 - -
Apr3g1312 300 SMART finulus 135 177 IPR011598 GO:0046983
Apr3g1312 300 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 13 168 - -
Apr3g1312 300 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 168 296 - -
Apr3g1312 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 168 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1312 Apr-Chr3 27575554 27577112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1312 10 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 47.335 1.68e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr3g1312 HLH 3.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1312 - - gmx:100778649 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1312 3 27575554 27577112 Apr3g1312 3 27575554 27577112 ECH
Apr2g2163 2 26749899 26751849 Apr3g1312 3 27575554 27577112 PCT